Fix bug in "Healthy" BioProject filtering

PulmonomicsLab · Sep 29, 2023 · 6c6c237 · 6c6c237
1 parent ce725b9
commit 6c6c237
Showing 1 changed file with 34 additions and 8 deletions.
diff --git a/js/browse.js b/js/browse.js
@@ -1,12 +1,14 @@
 var rows = null;
 var healthyControlRows = null;
+var subGroupRows = null;
 var disease = null;
+var subGroup = null;
 
 function hideDiv(divId){
     document.getElementById(divId).style.display = 'none';
 }
 
-function initializeData(dataJSON, dis) {
+function initializeDiseaseWiseData(dataJSON, dis) {
     rows = JSON.parse(dataJSON);
     disease = dis;
     healthyControlRows = new Set();
@@ -20,6 +22,11 @@ function initializeData(dataJSON, dis) {
 //     alert(Array.from(healthyControlRows));
 }
 
+function initializeSubGroupWiseData(dataJSON, sg) {
+    subGroupRows = JSON.parse(dataJSON);
+    subGroup = sg;
+}
+
 function getAllDiseasewiseResultHTML(divId) {
     var s = '<table class="browse-result-summary" border="1"><tr><th>BioProject ID</th><th>SRA Study ID</th><th>Run Count</th><th>Group</th><th>Sub-group</th><th>Isolation Source</th><th>Biome</th><th>Assay Type</th></tr>';
     for(var i=0; i<rows.length; ++i) {
@@ -58,6 +65,25 @@ function getFilteredDiseaseWiseResultHTML(divId) {
     return s;
 }
 
+function getAllSubGroupWiseResultHTML(divId) {
+    var s = '<table class="browse-result-summary" border="1"><tr><th>BioProject ID</th><th>SRA Study ID</th><th>Run Count</th><th>Group</th><th>Sub-group</th><th>Isolation Source</th><th>Biome</th><th>Assay Type</th></tr>';
+    for(var i=0; i<subGroupRows.length; ++i) {
+        s += '<tr>';
+        s += '<td><a style="color:#003325;" target="_blank" href="bioproject_id.php?key=' + subGroupRows[i].BioProject + '">' + subGroupRows[i].BioProject + ' <img src="resource/redirect-icon.png" height="14pt" width="auto" /></a></td>';
+        s += '<td>' + subGroupRows[i].SRA + '</td>';
+        s += '<td>' + subGroupRows[i].RunCount + '</td>';
+        s += '<td>' + subGroupRows[i].Grp.replace(/;/g, '; ') + '</td>';
+        s += '<td>' + subGroupRows[i].SubGroup.replace(/;/g, '; ') + '</td>';
+        s += '<td>' + subGroupRows[i].IsolationSource.replace(/;/g, '; ') + '</td>';
+        s += '<td>' + subGroupRows[i].Biome.replace(/;/g, '; ') + '</td>';
+        s += '<td>' + subGroupRows[i].AssayType.replace(/;/g, '; ') + '</td>';
+        s += '</tr>';
+    }
+    s += '</table>';
+
+    return s;
+}
+
 function filter_diseases(resultDivId) {
     var hideButton = '<center><button type="button" class="round" onclick="hideDiv(\'' + resultDivId + '\')">&#10005;</button></center>';
     var resultElement = document.getElementById(resultDivId);
@@ -85,7 +111,7 @@ function getBioProjects(dis, resultDivId){
     var httpReq = new XMLHttpRequest();
     httpReq.onreadystatechange = function() {
         if (this.readyState == 4 && this.status == 200) {
-            initializeData(this.responseText, dis);
+            initializeDiseaseWiseData(this.responseText, dis);
             if(document.getElementById('filter_cb') != null)
                 document.getElementById('filter_cb').checked = false;
             filter_diseases(resultDivId);
@@ -96,23 +122,23 @@ function getBioProjects(dis, resultDivId){
     httpReq.send();
 }
 
-function getSubgroupBioProjects(subGroup, resultDivId){
+function getSubgroupBioProjects(sg, resultDivId){
     var httpReq = new XMLHttpRequest();
     httpReq.onreadystatechange = function() {
         if (this.readyState == 4 && this.status == 200) {
-            initializeData(this.responseText, subGroup);
+            initializeSubGroupWiseData(this.responseText, sg);
             var resultElement = document.getElementById(resultDivId);
             resultElement.style.display = 'block';
             var hideButton = '<center><button type="button" class="round" onclick="hideDiv(\'' + resultDivId + '\')">&#10005;</button></center>';
-            var resultCountString = '<p style="margin:2px;text-align:center;">Total number of BioProjects found in the database for SubGroup = "' + subGroup + '" : ' + rows.length + '</p>';
-            var subgroupResultHTML = getAllDiseasewiseResultHTML('result_display');
-            if(rows.length <= 0)
+            var resultCountString = '<p style="margin:2px;text-align:center;">Total number of BioProjects found in the database for SubGroup = "' + sg + '" : ' + subGroupRows.length + '</p>';
+            var subgroupResultHTML = getAllSubGroupWiseResultHTML('result_display');
+            if(subGroupRows.length <= 0)
                 resultElement.innerHTML = hideButton + resultCountString;
             else
                 resultElement.innerHTML = hideButton + resultCountString + subgroupResultHTML;
         }
     };
-    httpReq.open('GET', 'subgroup_wise_bioprojects.php?key='+ encodeURIComponent(subGroup), true);
+    httpReq.open('GET', 'subgroup_wise_bioprojects.php?key='+ encodeURIComponent(sg), true);
     httpReq.setRequestHeader("Content-type", "text/json");
     httpReq.send();
 }