Adding first cut of feature to add common names for replacement trees…

data/botanical_commonname.json

@@ -0,0 +1,300 @@
+{"Acacia baileyana":"Bailey Acacia",
+"Acacia baileyana 'Purpurea'":"Purple Acacia",
+"Acacia cognata":"River Wattle",
+"Acacia longifolia":"Sydney Golden Wattle",
+"Acacia melanoxylon":"Black Acacia",
+"Acacia stenophylla":"Shoestring Acacia",
+"Acca sellowiana":"Pineapple Guava",
+"Acer palmatum":"Japanese Maple",
+"Acer paxii":"Acer Paxii",
+"Acer rubrum":"Red Maple",
+"Acer saccharinum":"Silver Maple",
+"Acer spp.":"Maple",
+"Acmena smithii":"Lilly-Pilly Tree",
+"Afrocarpus gracilior":"Fern Pine",
+"Afrocarpus macrophyllus":"Yew Pine",
+"Agathis robusta":"Queensland Kauri",
+"Agonis flexuosa":"Peppermint Tree",
+"Ailanthus altissima":"Tree Of Heaven",
+"Albizia julibrissin":"Silk Tree",
+"Allocasuarina verticillata":"Drooping She-Oak",
+"Alnus cordata":"Italian Alder",
+"Alnus rhombifolia":"White Alder",
+"Angophora costata":"Gum Myrtle",
+"Araucaria bidwillii":"Bunya-Bunya",
+"Araucaria columnaris":"Star Pine",
+"Araucaria heterophylla":"Norfolk Island Pine",
+"Arbutus 'Marina'":"Marina Arbutus",
+"Arbutus unedo":"Strawberry Tree",
+"Archontophoenix cunninghamiana":"King Palm",
+"Asphalted well":"Asphalted Well",
+"Auranticarpa rhombifolium":"Queensland Pittosporum",
+"Bauhinia blakeana":"Hong Kong Orchid Tree",
+"Bauhinia variegata":"Purple Orchid Tree",
+"Betula pendula":"European White Birch",
+"Brachychiton acerifolius":"Australian Flame Tree",
+"Brachychiton populneus":"Bottle Tree",
+"Brahea armata":"Mexican Blue Palm",
+"Brahea brandegeei":"San Jose Hesper Palm",
+"Brahea edulis":"Guadalupe Palm",
+"Butia capitata":"Pindo Palm",
+"Calocedrus decurrens":"Incense Cedar",
+"Calodendrum capense":"Cape Chestnut",
+"Carya illinoinensis":"Pecan",
+"Casimiroa edulis":"White Sapote",
+"Cassia leptophylla":"Gold Medallion Tree",
+"Castanea mollissima":"Chinese Chestnut",
+"Casuarina cunninghamiana":"River She-Oak",
+"Catalpa hybrida":"Hybrid Catalpa",
+"Cedrus atlantica":"Atlas Cedar",
+"Cedrus atlantica 'Glauca'":"Cedar Blue Atlas",
+"Cedrus deodara":"Deodar Cedar",
+"Cedrus libani":"Cedar-Of-Lebanon",
+"Ceiba speciosa":"Silk-Floss Tree",
+"Ceratonia siliqua":"Carob",
+"Cercidium floridum":"Blue Palo Verde",
+"Cercis canadensis":"Eastern Redbud",
+"Cercis canadensis 'Forest Pansy'":"Forest Pansy Redbud",
+"Cercis canadensis 'Oklahoma'":"Oklahoma Redbud",
+"Cercis canadensis texensis":"Texas Redbud",
+"Cercis canadensis var. mexicana":"Mexican Redbud",
+"Cercis occidentalis":"Western Redbud",
+"Cercis spp.":"Redbud",
+"Chamaerops humilis":"Mediterranean Fan Palm",
+"Chilopsis linearis":"Desert Willow",
+"Chionanthus retusus":"Chinese Fringe Tree",
+"Chitalpa tashkentensis":"Chitalpa",
+"Cinnamomum camphora":"Camphor Tree",
+"Citrus limon":"Lemon",
+"Citrus sinensis":"Orange",
+"Cocculus laurifolius":"Laurel-Leafed Snailseed",
+"Cordyline australis":"Dracaena",
+"Corymbia citriodora":"Lemon-Scented Gum",
+"Corymbia ficifolia":"Red Flowering Gum",
+"Corymbia maculata":"Spotted Gum",
+"Cotinus coggygria":"Smoke Tree",
+"Cryptomeria japonica":"Japanese Cedar",
+"Cupaniopsis anacardioides":"Carrotwood",
+"Cupressocyparis x leylandii":"Leyland Cypress",
+"Cupressus glabra":"Smoothbark Arizona Cypress",
+"Cupressus sempervirens":"Italian Cypress",
+"Cyathea cooperi":"Australian Tree Fern",
+"Diospyros virginiana":"American Persimmon",
+"Dodonaea viscosa":"Hopseed",
+"Dracaena draco":"Dragon Tree",
+"Duranta repens":"Brazilian Sky Flower",
+"Dypsis decaryi":"Triangle Palm",
+"Eriobotrya deflexa":"Bronze Loquat",
+"Eriobotrya japonica":"Edible Loquat",
+"Erythrina bidwillii":"Bidwills Coral Tree",
+"Erythrina caffra":"Kaffirboom Coral Tree",
+"Erythrina coralloides":"Naked Coral Tree",
+"Eucalyptus amplifolia":"Cabbage Gum",
+"Eucalyptus camaldulensis":"Red Gum",
+"Eucalyptus cinerea":"Ash Gum",
+"Eucalyptus cladocalyx":"Sugar Gum",
+"Eucalyptus cornuta":"Yate",
+"Eucalyptus deglupta":"Mindanao Gum",
+"Eucalyptus globulus":"Blue Gum",
+"Eucalyptus globulus 'Compacta'":"Dwarf Blue Gum",
+"Eucalyptus grandis":"Flooded Gum",
+"Eucalyptus lehmannii":"Bushy Yate",
+"Eucalyptus leucoxylon 'Rosea'":"Lg.-Fruit Red-Flowering Gum",
+"Eucalyptus nicholii":"Nichols Willow Leafed Peppermint",
+"Eucalyptus polyanthemos":"Silver Dollar Gum",
+"Eucalyptus pulverulenta":"Silver Mountain Gum",
+"Eucalyptus robusta":"Swamp Mahogony",
+"Eucalyptus rudis":"Desert Gum",
+"Eucalyptus sideroxylon":"Red Ironbark",
+"Eucalyptus torquata":"Coral Gum",
+"Eucalyptus viminalis":"Manna Gum",
+"Eugenia aggregata":"Cherry Of The Rio Grande",
+"Ficus benjamina 'Pandora Variegata'":"Chinese Weeping Banyan",
+"Ficus benjamina":"Weeping Fig",
+"Ficus carica":"Edible Fig",
+"Ficus elastica":"Rubber Tree",
+"Ficus lyrata":"Fiddleleaf Fig",
+"Ficus macrophylla":"Moreton Bay Fig",
+"Ficus microcarpa 'Green Gem'":"Green Gem Indian Laurel Fig",
+"Ficus microcarpa 'Nitida'":"Indian Laurel Fig",
+"Ficus microcarpa":"Weeping Indian Laurel Fig",
+"Ficus rubiginosa":"Rusty Leaf Fig",
+"Ficus spp.":"Fig",
+"Fraxinus angustifolia oxycarpa":"Raywood Ash",
+"Fraxinus uhdei":"Shamel Ash",
+"Fraxinus velutina":"Arizona Ash",
+"Geijera parviflora":"Australian Willow",
+"Ginkgo biloba 'Autumn Gold'":"Autumn Gold Ginkgo",
+"Ginkgo biloba":"Maidenhair Tree",
+"Gleditsia triacanthos":"Honey Locust",
+"Grevillea robusta":"Silk Oak",
+"Hakea suaveolens":"Sweet Hakea",
+"Handroanthus chrysotrichus":"Golden Trumpet Tree",
+"Handroanthus impetiginosus":"Pink Trumpet Tree",
+"Harpephyllum caffrum":"Kaffir Plum",
+"Hesperocyparis forbesii":"Tecate Cypress",
+"Hesperocyparis macrocarpa":"Monterey Cypress",
+"Heteromeles arbutifolia":"Toyon",
+"Howea belmoreana":"Sentry Palm",
+"Howea forsteriana":"Paradise Palm",
+"Hymenosporum flavum":"Sweetshade",
+"Ilex altaclarensis 'Wilsonii'":"Wilson Holly",
+"Jacaranda mimosifolia":"Jacaranda",
+"Jubaea chilensis":"Chilean Wine Palm",
+"Juglans hindsii":"Walnut",
+"Juniperus chinensis":"Chinese Juniper",
+"Juniperus chinensis 'Torulosa'":"Hollywood Juniper",
+"Koelreuteria bipinnata":"Chinese Flame Tree",
+"Koelreuteria paniculata":"Goldenrain Tree",
+"Lagerstroemia indica":"Crape Myrtle",
+"Lagerstroemia indica 'Muskogee'":"Muskogee Crape Myrtle",
+"Lagerstroemia indica 'Natchez'":"Natchez Crape Myrtle",
+"Lagerstroemia indica 'Purple'":"Purple Crape Myrtle",
+"Lagerstroemia indica 'Red'":"Red Crape Myrtle",
+"Lagerstroemia indica 'Tuscarora'":"Tuscarora Crape Myrtle",
+"Lagerstroemia indica 'White'":"White Crape Myrtle",
+"Lagunaria patersonii":"Primrose Tree",
+"Laurus nobilis":"Sweet Bay",
+"Leptospermum laevigatum":"Australian Tea Tree",
+"Leptospermum spp.":"Tea Tree",
+"Ligustrum lucidum":"Glossy Privet",
+"Liquidambar formosana":"Chinese Sweetgum",
+"Liquidambar styraciflua":"American Sweetgum",
+"Liquidambar styraciflua 'Rotundiloba'":"Round-Leafed Sweetgum",
+"Liriodendron tulipifera":"Tulip Tree",
+"Livistona chinensis":"Chinese Fountain Palm",
+"Lophostemon confertus":"Brisbane Box",
+"Lophostemon confertus 'Variegata'":"Variegated Brisbane Box",
+"Lyonothamnus floribundus":"Fern-Leaf Catalina Ironwood",
+"Macadamia integrifolia":"Smooth-Shell Macadamia",
+"Macadamia tetraphylla":"Rough-Shell Macadamia",
+"Magnolia champaca":"Champaca",
+"Magnolia grandiflora 'Little Gem'":"Little Gem Magnolia",
+"Magnolia grandiflora 'Samuel Sommer'":"Samuel Sommer Magnolia",
+"Magnolia grandiflora":"Southern Magnolia",
+"Malus floribunda":"Crabapple",
+"Malus sylvestris":"Edible Apple",
+"Maytenus boaria":"Mayten Tree",
+"Melaleuca armillaris":"Drooping Melaleuca",
+"Melaleuca citrina":"Lemon Bottlebrush",
+"Melaleuca ericifolia":"Heath Melaleuca",
+"Melaleuca genistifolia":"Melaleuca Decora",
+"Melaleuca linariifolia":"Flaxleaf Paperbark",
+"Melaleuca nesophila":"Pink Melaleuca",
+"Melaleuca quinquenervia":"Cajeput Tree",
+"Melaleuca spp.":"Melaleuca",
+"Melaleuca viminalis":"Weeping Bottlebrush",
+"Melia azedarach":"Chinaberry",
+"Metrosideros excelsus":"New Zealand Christmas Tree",
+"Morus alba":"White Mulberry",
+"Morus spp.":"Mulberry Species",
+"Musa spp.":"Banana Species",
+"Myoporum laetum":"Myoporum",
+"Myrtus communis":"True Myrtle",
+"Nerium oleander":"Oleander",
+"Nolina recurvata":"Ponytail Palm",
+"No Replant":"No Replant",
+"Olea europaea":"Olive",
+"Other tree":"Other Tree",
+"Palm spp.":"Palm",
+"Parkinsonia X 'Desert Museum'":"Desert Museum Palo Verde",
+"Persea americana":"Avocado",
+"Persea borbonia":"Red Bay",
+"Persea indica":"Madeira Bay Fig",
+"Phoenix canariensis":"Canary Island Date Palm",
+"Phoenix dactylifera":"Date Palm",
+"Phoenix reclinata":"Senegal Palm",
+"Phoenix roebelenii":"Pygmy Date Palm",
+"Phoenix rupicola":"Cliff Date Palm",
+"Pinus canariensis":"Canary Island Pine",
+"Pinus eldarica":"Afghan Pine",
+"Pinus halepensis":"Aleppo Pine",
+"Pinus pinea":"Italian Stone Pine",
+"Pinus radiata":"Monterey Pine",
+"Pinus roxburghii":"Chir Pine",
+"Pinus thunbergiana":"Japanese Black Pine",
+"Pinus torreyana":"Torrey Pine",
+"Pistacia chinensis":"Chinese Pistache",
+"Pittosporum crassifolium":"Karo",
+"Pittosporum phillyraeoides":"Willow Pittosporum",
+"Pittosporum tobira":"Mock Orange",
+"Pittosporum undulatum":"Victorian Box",
+"Pittosporum viridiflorum":"Cape Pittosporum",
+"Platanus hybrida":"London Plane",
+"Platanus mexicana":"Mexican Sycamore",
+"Platanus racemosa":"California Sycamore",
+"Platanus X hispanica 'Bloodgood'":"Bloodgood Plane",
+"Platanus X hispanica 'Columbia'":"Columbia Plane",
+"Platanus X hispanica":"London Plane",
+"Platanus X hispanica 'Yarwood'":"Yarwood Plane",
+"Platycladus orientalis":"Oriental Arborvitae",
+"Prunus armeniaca":"Apricot",
+"Prunus blireiana":"Flowering Plum",
+"Prunus caroliniana":"Carolina Laurel Cherry",
+"Prunus cerasifera 'Atropurpurea'":"Purple-Leaf Flowering Plum",
+"Prunus cerasifera 'Krater Vesuvius'":"Plum Krauters Vesuvius",
+"Prunus cerasifera 'Newport'":"Newport Plum",
+"Prunus cerasifera":"Purple-Leaf Plum",
+"Prunus domestica":"Plum",
+"Prunus ilicifolia":"Hollyleaf Cherry",
+"Prunus ilicifolia ssp. Lyonii":"Catalina Cherry",
+"Prunus lusitanica":"Portugal Laurel",
+"Prunus persica":"Peach",
+"Prunus spp.":"Stone Fruit",
+"Psidium guajava":"Guava",
+"Pyrus calleryana":"Ornamental Pear",
+"Pyrus kawakamii":"Evergreen Pear",
+"Quercus agrifolia":"Coast Live Oak",
+"Quercus engelmannii":"Engelmann Oak",
+"Quercus ilex":"Holly Oak",
+"Quercus suber":"Cork Oak",
+"Quercus tomentella":"Island Oak",
+"Quillaja saponaria":"Soapbark Tree",
+"Radermachera sinica":"China Doll",
+"Ravenea rivularis":"Majesty Palm",
+"Rhus lancea":"African Sumac",
+"Rhus laurina":"Laurel Sumac",
+"Robinia ambigua 'Idahoensis'":"Idaho Locust",
+"Robinia pseudoacacia":"Black Locust",
+"Roystonea regia":"Cuban Royal Palm",
+"Salix babylonica":"Weeping Willow",
+"Schefflera actinophylla":"Queensland Umbrella Tree",
+"Schinus molle":"California Pepper",
+"Schinus terebinthifolius":"Brazilian Pepper",
+"Sequoia sempervirens":"Coast Redwood",
+"Stenocarpus sinuatus":"Firewheel Tree",
+"Strelitzia nicolai":"Giant Bird Of Paradise",
+"Stump - not accessible":"Stump - Not Accessible",
+"Stump":"Stump",
+"Styphnolobium japonicum":"Japanese Pagoda Tree",
+"Syagrus romanzoffianum":"Queen Palm",
+"Syzygium paniculatum":"Brush Cherry",
+"Syzygium spp.":"Eugenia",
+"Taxodium distichum":"Bald Cypress",
+"Taxodium huegelii":"Mexican Cypress",
+"Tecoma stans":"Yellow Elder",
+"Thuja occidentalis":"American Arborvitae",
+"Tilia americana":"American Linden",
+"Tipuana tipu":"Tipu",
+"Trachycarpus fortunei":"Windmill Palm",
+"Tristaniopsis laurina":"Water Gum",
+"Ulmus parvifolia 'Allee'":"Allee Elm",
+"Ulmus parvifolia":"Chinese Elm",
+"Ulmus parvifolia 'Drake'":"Drake Elm",
+"Ulmus propinqua 'Emerald Sunshine'":"Emerald Sunshine Elm",
+"Ulmus pumila":"Siberian Elm",
+"Umbellularia californica":"California Bay",
+"Unidentified spp.":"Unidentified Tree",
+"Unsuitable site":"Unsuitable Site",
+"Vacant site":"Vacant Site",
+"Viburnum spp.":"Viburnum",
+"Washingtonia filifera":"California Fan Palm",
+"Washingtonia filifera X robusta":"Filibuster Hybrid Fan Palm",
+"Washingtonia robusta":"Mexican Fan Palm",
+"Wisteria sinensis":"Chinese Wisteria",
+"Wodyetia bifurcata":"Foxtail Palm",
+"Yucca elephantipes":"Giant Yucca",
+"Yucca gloriosa":"Spanish Dagger",
+"Yucca spp.":"Yucca Species",
+"Zelkova serrata":"Sawtooth Zelkova"
+}

pruning_planting.py

@@ -19,7 +19,7 @@ def load_dataset(name):
     return gdf
 
 
-def planting_for_trees(trees):
+def planting_for_trees(trees, name_lookup):
     """
     Match a replacement species and planting year for
     all the trees in a dataframe.
@@ -64,6 +64,26 @@ def nearest_planting_segment(tree):
     trees = trees.rename(
         columns={"YEAR": "planting_year", "REPLACE": "replacement_species"}
     )
+
+    def add_replacement_common_name(row):
+
+        # Loop through multiple, comma separated scientific names and generate a comma separated list of
+        # the common names to add as a new column of the tress Dataframe.
+
+        common_names = ""
+
+        for scientific_name in [x.strip() for x in row["replacement_species"].split(',')]:
+            if scientific_name in name_lookup.keys():
+                common_names = common_names + name_lookup[scientific_name] + ", "
+            else:
+                common_names += "INVALID, "
+
+        common_names = common_names[:-2]
+
+        return common_names
+
+    trees["replacement_common_name"] = trees.apply(add_replacement_common_name, axis=1)
+
     return trees
 
 
@@ -125,8 +145,11 @@ def get_pruning_zone(tree):
     if len(sys.argv) > 2:
         outfile = open(sys.argv[2], 'w')
 
+    with open('data/botanical_commonname.json') as json_lookup_file:
+        name_lookup = json.load(json_lookup_file)
+
     trees = pd.read_json(infile)
-    trees = planting_for_trees(trees)
+    trees = planting_for_trees(trees, name_lookup)
     trees = pruning_for_trees(trees)
     rename_columns = {
         "SEGMENT": "segment",