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Investigate missing datazone from episode file #773

Merged
merged 10 commits into from
Aug 2, 2023
3 changes: 2 additions & 1 deletion R/create_individual_file.R
Original file line number Diff line number Diff line change
Expand Up @@ -846,7 +846,8 @@ join_slf_lookup_vars <- function(individual_file,
#' @param year financial year.
#' @param sc_client SC client lookup
#' @param sc_demographics SC Demographic lookup
join_sc_client <- function(individual_file,
join_sc_client <- function(
individual_file,
year,
sc_client = read_file(get_source_extract_path(year, "Client")),
sc_demographics = read_file(get_sc_demog_lookup_path(),
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4 changes: 4 additions & 0 deletions R/process_extract_ae.R
Original file line number Diff line number Diff line change
Expand Up @@ -35,6 +35,10 @@ process_extract_ae <- function(data, year, write_to_disk = TRUE) {
.data$postcode_chi,
.data$postcode_epi
)) %>%
# A&E data has postcode in PC8 format but we need it in PC7 format
dplyr::mutate(
postcode = phsmethods::format_postcode(.data$postcode, "pc7")
) %>%
## recode cypher HB codes ##
dplyr::mutate(
dplyr::across(c("hbtreatcode", "hbrescode"), ~ dplyr::case_when(
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3 changes: 2 additions & 1 deletion R/process_lookup_gpprac.R
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,8 @@
#' @return the final data as a [tibble][tibble::tibble-package].
#' @export
#' @family process extracts
process_lookup_gpprac <- function(open_data = get_gpprac_opendata(),
process_lookup_gpprac <- function(
open_data = get_gpprac_opendata(),
gpprac_ref_path = get_gpprac_ref_path(),
spd_path = get_spd_path(),
write_to_disk = TRUE) {
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5 changes: 2 additions & 3 deletions R/read_lookup_sc_client.R
Original file line number Diff line number Diff line change
Expand Up @@ -9,9 +9,8 @@
#' @return the final data as a [tibble][tibble::tibble-package].
#' @export
#' @family process extracts
read_lookup_sc_client <- function(
fyyear,
sc_dvprod_connection = phs_db_connection(dsn = "DVPROD")) {
read_lookup_sc_client <- function(fyyear,
sc_dvprod_connection = phs_db_connection(dsn = "DVPROD")) {
check_year_format(fyyear)
year <- convert_fyyear_to_year(fyyear)

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3 changes: 1 addition & 2 deletions R/read_lookup_sc_demographics.R
Original file line number Diff line number Diff line change
Expand Up @@ -5,8 +5,7 @@
#' @return a [tibble][tibble::tibble-package]
#' @export
#'
read_lookup_sc_demographics <- function(
sc_connection = phs_db_connection(dsn = "DVPROD")) {
read_lookup_sc_demographics <- function(sc_connection = phs_db_connection(dsn = "DVPROD")) {
sc_demog <- dplyr::tbl(
sc_connection,
dbplyr::in_schema("social_care_2", "demographic_snapshot")
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3 changes: 1 addition & 2 deletions R/read_sc_all_alarms_telecare.R
Original file line number Diff line number Diff line change
Expand Up @@ -6,8 +6,7 @@
#'
#' @export
#'
read_sc_all_alarms_telecare <- function(
sc_dvprod_connection = phs_db_connection(dsn = "DVPROD")) {
read_sc_all_alarms_telecare <- function(sc_dvprod_connection = phs_db_connection(dsn = "DVPROD")) {
# Read in data---------------------------------------

## read in data - social care 2 demographic
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