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Public-Health-Scotland · Jul 19, 2023 · 37471f0 · 37471f0
1 parent c66146b
commit 37471f0
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Showing 5 changed files with 28 additions and 35 deletions.
diff --git a/R/add_nsu_cohort.R b/R/add_nsu_cohort.R
@@ -12,8 +12,7 @@
 add_nsu_cohort <- function(
     data,
     year,
-    nsu_cohort = read_file(get_nsu_path(year))
-) {
+    nsu_cohort = read_file(get_nsu_path(year))) {
   year_param <- year
 
   if (!check_year_valid(year, "NSU")) {

diff --git a/R/fill_geographies.R b/R/fill_geographies.R
@@ -13,10 +13,9 @@ fill_geographies <- function(
     data,
     slf_pc_lookup = read_file(get_slf_postcode_path()),
     slf_gpprac_lookup = read_file(
-    get_slf_gpprac_path(),
-    col_select = c("gpprac", "cluster", "hbpraccode")
-  )
-) {
+      get_slf_gpprac_path(),
+      col_select = c("gpprac", "cluster", "hbpraccode")
+    )) {
   check_variables_exist(data, c(
     "chi",
     "postcode",
@@ -102,8 +101,7 @@ make_gpprac_lookup <- function(data) {
 
 fill_postcode_geogs <- function(
     data,
-    slf_pc_lookup
-) {
+    slf_pc_lookup) {
   filled_postcodes <- dplyr::left_join(
     data,
     make_postcode_lookup(data),
@@ -151,9 +149,8 @@ fill_postcode_geogs <- function(
 
 fill_gpprac_geographies <- function(
     data,
-    slf_gpprac_lookup
-) {
-    filled_gpprac <- dplyr::left_join(
+    slf_gpprac_lookup) {
+  filled_gpprac <- dplyr::left_join(
     data,
     make_gpprac_lookup(data),
     by = "chi"

diff --git a/R/get_source_extract_path.R b/R/get_source_extract_path.R
@@ -13,26 +13,25 @@
 get_source_extract_path <- function(
     year,
     type = c(
-    "Acute",
-    "AE",
-    "AT",
-    "CH",
-    "Client",
-    "CMH",
-    "DD",
-    "Deaths",
-    "DN",
-    "GPOoH",
-    "HC",
-    "Homelessness",
-    "Maternity",
-    "MH",
-    "Outpatients",
-    "PIS",
-    "SDS"
-  ),
-    ...
-) {
+      "Acute",
+      "AE",
+      "AT",
+      "CH",
+      "Client",
+      "CMH",
+      "DD",
+      "Deaths",
+      "DN",
+      "GPOoH",
+      "HC",
+      "Homelessness",
+      "Maternity",
+      "MH",
+      "Outpatients",
+      "PIS",
+      "SDS"
+    ),
+    ...) {
   type <- match.arg(type)
 
   if (!check_year_valid(year, type)) {

diff --git a/R/match_on_ltcs.R b/R/match_on_ltcs.R
@@ -11,8 +11,7 @@
 match_on_ltcs <- function(
     data,
     year,
-    ltc_data = read_file(get_ltcs_path(year))
-) {
+    ltc_data = read_file(get_ltcs_path(year))) {
   # Match on LTC lookup
   matched <- dplyr::left_join(
     data,

diff --git a/R/run_episode_file.R b/R/run_episode_file.R
@@ -390,8 +390,7 @@ join_cohort_lookups <- function(
     service_use_cohort = read_file(
       get_service_use_cohorts_path(year, update),
       col_select = c("chi", "service_use_cohort")
-    )
-) {
+    )) {
   join_cohort_lookups <- data %>%
     dplyr::left_join(
       demographic_cohort,