Add Running SLF files manually scripts

Run_SLF_Files_manually/run_episode_file_1415.R

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+library(targets)
+library(createslf)
+
+year <- "1415"
+
+targets_store <- fs::path("/conf/sourcedev/Source_Linkage_File_Updates/", "_targets")
+
+processed_data_list <- list(
+  acute = targets::tar_read(
+    "source_acute_extract_1415",
+    store = targets_store
+  ),
+  ae = targets::tar_read(
+    "source_ae_extract_1415",
+    store = targets_store
+  ),
+  cmh = targets::tar_read(
+    "source_cmh_extract_1415",
+    store = targets_store
+  ),
+  cmh = targets::tar_read(
+    "source_cmh_extract_1415",
+    store = targets_store
+  ),
+  dn = targets::tar_read(
+    "source_dn_extract_1415",
+    store = targets_store
+  ),
+  deaths = targets::tar_read(
+    "source_nrs_deaths_extract_1415",
+    store = targets_store
+  ),
+  homelessness = targets::tar_read(
+    "source_homelessness_extract_1415",
+    store = targets_store
+  ),
+  maternity = targets::tar_read(
+    "source_maternity_extract_1415",
+    store = targets_store
+  ),
+  mental_health = targets::tar_read(
+    "source_mental_health_extract_1415",
+    store = targets_store
+  ),
+  outpatients = targets::tar_read(
+    "source_outpatients_extract_1415",
+    store = targets_store
+  ),
+  gp_ooh = targets::tar_read(
+    "source_ooh_extract_1415",
+    store = targets_store
+  ),
+  prescribing = targets::tar_read(
+    "source_prescribing_extract_1415",
+    store = targets_store
+  ),
+  care_home = targets::tar_read(
+    "source_sc_care_home_1415",
+    store = targets_store
+  ),
+  home_care = targets::tar_read(
+    "source_sc_home_care_1415",
+    store = targets_store
+  ),
+  at = targets::tar_read(
+    "source_sc_alarms_tele_1415",
+    store = targets_store
+  ),
+  sds = targets::tar_read(
+    "source_sc_sds_1415",
+    store = targets_store
+  )
+)
+
+# Run episode file
+create_episode_file(processed_data_list, year = year) %>%
+  process_tests_episode_file(year = year)
+
+## End of Script ##
+
+

Run_SLF_Files_manually/run_episode_file_1516.R

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+library(targets)
+library(createslf)
+
+year <- "1516"
+
+targets_store <- fs::path("/conf/sourcedev/Source_Linkage_File_Updates/", "_targets")
+
+processed_data_list <- list(
+  acute = targets::tar_read(
+    "source_acute_extract_1516",
+    store = targets_store
+  ),
+  ae = targets::tar_read(
+    "source_ae_extract_1516",
+    store = targets_store
+  ),
+  cmh = targets::tar_read(
+    "source_cmh_extract_1516",
+    store = targets_store
+  ),
+  cmh = targets::tar_read(
+    "source_cmh_extract_1516",
+    store = targets_store
+  ),
+  dn = targets::tar_read(
+    "source_dn_extract_1516",
+    store = targets_store
+  ),
+  deaths = targets::tar_read(
+    "source_nrs_deaths_extract_1516",
+    store = targets_store
+  ),
+  homelessness = targets::tar_read(
+    "source_homelessness_extract_1516",
+    store = targets_store
+  ),
+  maternity = targets::tar_read(
+    "source_maternity_extract_1516",
+    store = targets_store
+  ),
+  mental_health = targets::tar_read(
+    "source_mental_health_extract_1516",
+    store = targets_store
+  ),
+  outpatients = targets::tar_read(
+    "source_outpatients_extract_1516",
+    store = targets_store
+  ),
+  gp_ooh = targets::tar_read(
+    "source_ooh_extract_1516",
+    store = targets_store
+  ),
+  prescribing = targets::tar_read(
+    "source_prescribing_extract_1516",
+    store = targets_store
+  ),
+  care_home = targets::tar_read(
+    "source_sc_care_home_1516",
+    store = targets_store
+  ),
+  home_care = targets::tar_read(
+    "source_sc_home_care_1516",
+    store = targets_store
+  ),
+  at = targets::tar_read(
+    "source_sc_alarms_tele_1516",
+    store = targets_store
+  ),
+  sds = targets::tar_read(
+    "source_sc_sds_1516",
+    store = targets_store
+  )
+)
+
+# Run episode file
+create_episode_file(processed_data_list, year = year)## %>%
+  #process_tests_episode_file(year = year)
+
+## End of Script ##

Run_SLF_Files_manually/run_episode_file_1617.R

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+library(targets)
+library(createslf)
+
+year <- "1617"
+
+targets_store <- fs::path("/conf/sourcedev/Source_Linkage_File_Updates/", "_targets")
+
+processed_data_list <- list(
+  acute = targets::tar_read(
+    "source_acute_extract_1617",
+    store = targets_store
+  ),
+  ae = targets::tar_read(
+    "source_ae_extract_1617",
+    store = targets_store
+  ),
+  cmh = targets::tar_read(
+    "source_cmh_extract_1617",
+    store = targets_store
+  ),
+  cmh = targets::tar_read(
+    "source_cmh_extract_1617",
+    store = targets_store
+  ),
+  dn = targets::tar_read(
+    "source_dn_extract_1617",
+    store = targets_store
+  ),
+  deaths = targets::tar_read(
+    "source_nrs_deaths_extract_1617",
+    store = targets_store
+  ),
+  homelessness = targets::tar_read(
+    "source_homelessness_extract_1617",
+    store = targets_store
+  ),
+  maternity = targets::tar_read(
+    "source_maternity_extract_1617",
+    store = targets_store
+  ),
+  mental_health = targets::tar_read(
+    "source_mental_health_extract_1617",
+    store = targets_store
+  ),
+  outpatients = targets::tar_read(
+    "source_outpatients_extract_1617",
+    store = targets_store
+  ),
+  gp_ooh = targets::tar_read(
+    "source_ooh_extract_1617",
+    store = targets_store
+  ),
+  prescribing = targets::tar_read(
+    "source_prescribing_extract_1617",
+    store = targets_store
+  ),
+  care_home = targets::tar_read(
+    "source_sc_care_home_1617",
+    store = targets_store
+  ),
+  home_care = targets::tar_read(
+    "source_sc_home_care_1617",
+    store = targets_store
+  ),
+  at = targets::tar_read(
+    "source_sc_alarms_tele_1617",
+    store = targets_store
+  ),
+  sds = targets::tar_read(
+    "source_sc_sds_1617",
+    store = targets_store
+  )
+)
+
+# Run episode file
+create_episode_file(processed_data_list, year = year) ##%>%
+  #process_tests_episode_file(year = year)
+
+## End of Script ##

Run_SLF_Files_manually/run_individual_file_1415.R

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+library(createslf)
+
+year <- "1415"
+
+episode_file <- arrow::read_parquet(get_slf_episode_path(year))
+
+# Run individual file
+create_individual_file(episode_file, year = year) %>%
+  process_tests_individual_file(year = year)

Run_SLF_Files_manually/run_individual_file_1516.R

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+library(createslf)
+
+year <- "1516"
+
+episode_file <- arrow::read_parquet(get_slf_episode_path(year))
+
+# Run individual file
+create_individual_file(episode_file, year = year)# %>%
+  #process_tests_individual_file(year = year)

Run_SLF_Files_manually/run_individual_file_1617.R

@@ -0,0 +1,9 @@
+library(createslf)
+
+year <- "1617"
+
+episode_file <- arrow::read_parquet(get_slf_episode_path(year))
+
+# Run individual file
+create_individual_file(episode_file, year = year) #%>%
+  #process_tests_individual_file(year = year)