Merge branch 'september-2024' into gpooh_cup

.github/actions/spelling/allow.txt

@@ -9,3 +9,4 @@ Moohan
 Scougal
 Tayside
 Zihao
+ubuntu

.github/actions/spelling/excludes.txt

@@ -43,6 +43,7 @@
 \.psd$
 \.pyc$
 \.s$
+\.sps$
 \.svgz?$
 \.tar$
 \.tiff?$
@@ -57,4 +58,5 @@
 ^\Q.github/workflows/spelling.yml\E$
 ^\Q/tmp/check-spelling/Public-Health-Scotland/source-linkage-files/commits/f13483ca341940e8549dc23c930da2f23dd0ac43.message\E$
 ^\Q/tmp/check-spelling/Public-Health-Scotland/source-linkage-files/pull-request/613/summary.txt\E$
+^\Qinst/WORDLIST\E$
 ignore$

.github/actions/spelling/expect.txt

@@ -1,9 +1,11 @@
-acc
-accom
+ACa
+Accom
+Admissio
 admloc
 admtype
 adpe
 adtf
+alstr
 arrivalmode
 arth
 atlassian
@@ -16,6 +18,7 @@ birthtime
 bloodbfo
 bodyloc
 boxi
+CAK
 callr
 canx
 carehome
@@ -26,24 +29,25 @@ ccyy
 cdn
 cennum
 CEREBROVASC
+CHC
 chd
 chp
 chpstart
 cij
-classificat
-cls
+Classificat
 cmh
 cnws
 codecov
 comhairle
 commhosp
 congen
 copd
-costincdnas
+costinc
 costmonthnum
 costsfy
 covr
 cph
+CPN
 createslf
 customise
 cvd
@@ -57,124 +61,159 @@ datetime
 daycase
 dbconnect
 dbplyr
+deathdate
 deathdiag
 demog
+dependant
 devhints
-dfc
-diagramme
+Diagramme
 disch
 dischloc
 dischto
+discondition
 disdest
+DMe
 dminutes
 dna
 dontrun
+dotdash
 downup
 dplyr
+Drugsand
 dsn
 dtplyr
+Dunkeld
 dvprod
 endomet
 envir
+eol
 fcase
 feb
+Fhelper
 fifelse
 fileext
-finalise
+Finalise
 fnc
+Fraility
 fst
 ftm
+furrr
 fyear
 fyyear
 geogs
 ggplot
+GIC
 github
+GLS
 gls
+glsrecord
 gms
-gpoo
+GPOo
+gpooh
 gpprac
 gss
+gtsave
 hbnames
 hbp
 hbpraccode
 hbrescode
 hbtreatcode
 hbtreatname
 hci
-hcp
+HCP
 hefailure
 hhg
+hiw
 hjust
 hms
 homecare
 homev
 hri
+HSCDIIP
 hscdiip
 hscp
 hscpnames
+htmltools
 htmlwidgets
-idpc
-infyyear
+httr
+IDPC
+img
+improvementservice
+incdn
+incdnas
+integerish
 intzone
 ipdc
+isdscotland
 issuenumber
-itle
-iwalk
 jaccard
 jan
+javascript
 jennifer
 jul
+JXz
 keydate
 keyring
 keytime
-keytimex
 kis
-lazydt
+knitr
 lcap
 lcho
 lgl
+linetype
 lintr
 los
 ltc
+ltd
 lubridate
 magrittr
 markdownguide
 matern
 mcbride
 mcmahon
+microsoft
 MIU
-mmmyy
+MMMYY
+momths
 monthflag
 mpat
+multiarch
 multiday
 multisession
 multistaff
 na
+NAs
+netlify
 newcons
 nhs
 nhshosp
+noptions
+noreply
 nrs
 nsu
+nwtgck
 odbc
 oldtadm
 opendata
-openxl
 openxlsx
-orcid
-outfile
+ORCID
+overcounting
 pandoc
 parkinsons
 patflow
 pattype
-pcec
+PCEC
+PERTH
+PHIBCS
 phs
 phsmethods
 phsopendata
+Physicaland
 pkgdown
 placeinc
-plics
-pms
+PLICS
 popluation
+Posix
 postcodes
 ppas
 prac
@@ -183,10 +222,9 @@ ptypes
 purrr
 quickstart
 rankdir
-rbuildignore
 rcmdcheck
 rdd
-rds
+rdname
 reabl
 reablement
 readcode
@@ -197,18 +235,26 @@ recid
 refailure
 reflectoring
 refsource
+reftype
+relaint
 renviron
+returnsthe
 rlang
 rmarkdown
+Rnw
+ROBERM
 roxygen
-rprofile
-rscript
+roxygenise
+Roxygenize
+Rprofile
+Rscript
 rspm
 rstudio
 rstudioapi
-rtype
+sco
 scoial
 scotp
+SCTASK
 SDcols
 seealso
 selfharm
@@ -224,37 +270,42 @@ slfhelper
 smr
 smra
 smrtype
+sourcedev
 sparra
 spd
+SPSS
 spss
 stadm
 starwars
 stefanzweifel
+stopwords
 stringdist
 stringr
 submis
+sysmis
+tac
 tadm
 tarchetypes
-tbl
 telecare
 testthat
 thom
 tibble
 tidyr
 tidyselect
-todo
+tidyverse
+totalnodncontacts
 uid
 ungroup
-unicode
+unrecognised
 updown
 upi
-vline
+URx
+usethis
 workflows
 xintercept
 xlsx
 yearstay
-yml
-yyyyqx
-Zihao
+YYYYQX
+zihao
 zsav
 zstd

.github/actions/spelling/patterns.txt

@@ -32,3 +32,8 @@
 
 # uuid:
 \b[0-9a-fA-F]{8}-(?:[0-9a-fA-F]{4}-){3}[0-9a-fA-F]{12}\b
+
+# Automatically suggested patterns
+# hit-count: 27 file-count: 17
+# version suffix <word>v#
+(?:(?<=[A-Z]{2})V|(?<=[a-z]{2}|[A-Z]{2})v)\d+(?:\b|(?=[a-zA-Z_]))

.github/workflows/R-CMD-check.yaml

@@ -17,7 +17,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        r_version: ['3.6', '4.0.2', '4.1.2', 'release']
+        r_version: ['4.0.2', '4.1.2', 'release']
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/spelling.yml

@@ -72,13 +72,13 @@ jobs:
       with:
         suppress_push_for_open_pull_request: 1
         checkout: true
-        check_file_names: 1
+        check_file_names: 0
         spell_check_this: check-spelling/spell-check-this@prerelease
         post_comment: 0
         use_magic_file: 1
         experimental_apply_changes_via_bot: 1
         use_sarif: 0
-        only_check_changed_files: 1
+        only_check_changed_files: 0
         extra_dictionary_limit: 10
         extra_dictionaries:
            cspell:r/src/r.txt