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Bug/tidyselect not working #85

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merged 6 commits into from
Aug 8, 2024
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Moohan
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@Moohan Moohan commented Aug 5, 2024

This partially resolves #84 I'm pretty sure what I have is an improvement (with no regressions) but it's not a complete fix.

I don't have time to work on this anymore and to be honest, all the non-standard evaluation stuff is outside my comfort zone! It might be worth getting in touch with Nic - [email protected] - as he did the work on Public-Health-Scotland/phslookups#9 which is a simpler version of this.

I added tests which you'll probably want to expand, the only one that doesn't work is:

read_slf_episode(
      "1920",
      col_select = c("year", dplyr::contains("dd")),
      recids = "DD"
    )

i.e. when a user uses tidyselect helpers and uses the filter but (probably) didn't include the required filter variable. In the above example, it's filtering by recid but recid isn't in col_select.

@Moohan Moohan requested a review from lizihao-anu August 5, 2024 11:14
@Moohan Moohan added the bug an unexpected problem or unintended behavior label Aug 5, 2024
@Jennit07
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Jennit07 commented Aug 6, 2024

Thanks @Moohan appreciate your help with this. Zihao is going to pick this up and look into developing it further.

lizihao-anu and others added 2 commits August 6, 2024 16:30
allow for recid and partnership filter when they are not specified to select in columns
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lizihao-anu commented Aug 6, 2024

Thank you for the work, @Moohan!

The current approach looks great but it fails in adding "recid" or "hscd2018" to columns to select. Honestly, I could not find a way to make tidy selection work outside a selecting function. The error looks like below.

Error:
! `ends_with()` must be used within a *selecting* function.
ℹ See ?tidyselect::faq-selection-context for details.

The workaround is to use read_parquet once more for recid or partnerships. Given the super-fast speed of parquet, although it doubles the read_slf execution time, it does not really matter. The benchmark shows that the running time increases from 250ms-ish to 500ms-ish.

Are you happy with the workaround and merging the pull request? @Moohan Thanks!

@lizihao-anu lizihao-anu marked this pull request as ready for review August 6, 2024 15:40
lizihao-anu
lizihao-anu previously approved these changes Aug 6, 2024
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Moohan commented Aug 6, 2024

Nice work, I think this solution is fine 👍 I can't see a way to clean up the code anymore than you have it already, and the final case is probably pretty niche (filtering without asking for the relevant filter variable), so probably fine if it's slightly slower in that case.

@lizihao-anu lizihao-anu added this pull request to the merge queue Aug 8, 2024
Merged via the queue into development with commit 0cb714f Aug 8, 2024
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@lizihao-anu lizihao-anu deleted the bug/tidyselect_not_working branch August 8, 2024 16:57
github-merge-queue bot added a commit that referenced this pull request Aug 19, 2024
* Update to dev version

* Make testthat run in parallel

* Fix build tests (#63)

* Update variables to pass tests

* Update indiv number of variables

* Change exists tests to read

* Set an environment var to make testthat use multiple CPUs

---------

Co-authored-by: James McMahon <[email protected]>

* Bug/tidyselect not working (#85)

* Allow using tidyselect helpers with `col_select`

* Add some tests for tidyselect helpers

* Update documentation

* recid and partnership filter
allow for recid and partnership filter when they are not specified to select in columns

* Style package

* update tests

---------

Co-authored-by: Moohan <[email protected]>
Co-authored-by: Zihao Li <[email protected]>
Co-authored-by: lizihao-anu <[email protected]>

* Documentation (#88)

* Update maintainer to Megan (#69)

* Update README.Rmd (#64)

Co-authored-by: Jennit07 <[email protected]>

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* Update variables to pass tests

* Update indiv number of variables

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* Set an environment var to make testthat use multiple CPUs

* Revert changes and deal with NA chi/anon_chi

* Update documentation

* Style package

* Update tests so that they pass

* Style package

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* Render `README.md` after changes to the `.Rmd` version

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---------

Co-authored-by: James McMahon <[email protected]>
Co-authored-by: Jennit07 <[email protected]>

* Render `README.md` after changes to the `.Rmd` version (#70)

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github-merge-queue bot added a commit that referenced this pull request Sep 9, 2024
* Update to dev version

* Make testthat run in parallel

* Fix build tests (#63)

* Update variables to pass tests

* Update indiv number of variables

* Change exists tests to read

* Set an environment var to make testthat use multiple CPUs

---------

Co-authored-by: James McMahon <[email protected]>

* Bug/tidyselect not working (#85)

* Allow using tidyselect helpers with `col_select`

* Add some tests for tidyselect helpers

* Update documentation

* recid and partnership filter
allow for recid and partnership filter when they are not specified to select in columns

* Style package

* update tests

---------

Co-authored-by: Moohan <[email protected]>
Co-authored-by: Zihao Li <[email protected]>
Co-authored-by: lizihao-anu <[email protected]>

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* Update maintainer to Megan (#69)

* Update README.Rmd (#64)

Co-authored-by: Jennit07 <[email protected]>

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* Make testthat run in parallel

* Update variables to pass tests

* Update indiv number of variables

* Change exists tests to read

* Set an environment var to make testthat use multiple CPUs

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* Update documentation

* Style package

* Update tests so that they pass

* Style package

* fix tests

* Render `README.md` after changes to the `.Rmd` version

* exclude from tests for now

---------

Co-authored-by: James McMahon <[email protected]>
Co-authored-by: Jennit07 <[email protected]>

* Render `README.md` after changes to the `.Rmd` version (#70)

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---------

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* Style package

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* Style package

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---------

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* update ep and individual file variables

---------

Co-authored-by: lizihao-anu <[email protected]>
Co-authored-by: Jennit07 <[email protected]>

* Increment version number to 0.10.4

* Update NEWS

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Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: James McMahon <[email protected]>
Co-authored-by: Moohan <[email protected]>
Co-authored-by: Zihao Li <[email protected]>
Co-authored-by: lizihao-anu <[email protected]>
Co-authored-by: Zihao Li <[email protected]>
Co-authored-by: Jennit07 <[email protected]>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-merge-queue[bot] <github-merge-queue[bot]@users.noreply.github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Megan McNicol <[email protected]>
Co-authored-by: marjom02 <[email protected]>
Co-authored-by: github-merge-queue[bot] <118344674+github-merge-queue[bot]@users.noreply.github.com>
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