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Porting of 2d_autoencoderkl and 3d_autoencoderkl tutorials from MONAI generative #1823

Merged
merged 32 commits into from
Sep 20, 2024
Merged

Porting of 2d_autoencoderkl and 3d_autoencoderkl tutorials from MONAI generative #1823

merged 32 commits into from
Sep 20, 2024

Commits on Sep 4, 2024

  1. Porting of 2D ControlNet tutorial using DDPM and ControlNet to guide … 

    …the synthetic process. We used BraTS and conditioning on binary brain masks.

Signed-off-by: Virginia Fernandez <[email protected]>
    Virginia Fernandez committed Sep 4, 2024
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  2. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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  3. Removing blank line at end of file. 

    Signed-off-by: Virginia Fernandez <[email protected]>
    Virginia Fernandez committed Sep 4, 2024
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  4. Merge remote-tracking branch 'origin/main' into main

    Virginia Fernandez committed Sep 4, 2024
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  5. Removing blank line at end of file. 

    Signed-off-by: Virginia Fernandez <[email protected]>
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  6. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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Commits on Sep 5, 2024

  1. Fix flake8 issues to ControlNet. 

    Signed-off-by: Virginia Fernandez <[email protected]>
    Virginia Fernandez committed Sep 5, 2024
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  2. Merge remote-tracking branch 'origin/main' into main 

    # Conflicts:
#	generation/controlnet/2d_controlnet.ipynb
    Virginia Fernandez committed Sep 5, 2024
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  3. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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Commits on Sep 6, 2024

  1. Set download to True. 

    Signed-off-by: Virginia Fernandez <[email protected]>
    Virginia Fernandez committed Sep 6, 2024
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  2. Merge branch 'main' into main

    @KumoLiu
    KumoLiu authored Sep 6, 2024
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  3. Change call to autocast. 

    Signed-off-by: Virginia Fernandez <[email protected]>
    Virginia Fernandez committed Sep 6, 2024
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  4. Merge remote-tracking branch 'origin/main' into main

    Virginia Fernandez committed Sep 6, 2024
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  5. Merge branch 'Project-MONAI:main' into main

    @virginiafdez
    virginiafdez authored Sep 6, 2024
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  6. Change call to autocast. 

    Signed-off-by: Virginia Fernandez <[email protected]>
    Virginia Fernandez committed Sep 6, 2024
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  7. Merge branch 'main' into main

    @KumoLiu
    KumoLiu authored Sep 6, 2024
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  8. Addition of ControlNet to the README. 

    Signed-off-by: Virginia Fernandez <[email protected]>
    Virginia Fernandez committed Sep 6, 2024
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Commits on Sep 9, 2024

  1. Addition of tutorials for the 2D and 3D autoencoderkl. 

    Signed-off-by: Virginia Fernandez <[email protected]>
    Virginia Fernandez committed Sep 9, 2024
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  2. Merge branch 'Project-MONAI:main' into main

    @virginiafdez
    virginiafdez authored Sep 9, 2024
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  3. Addition of tutorials for the 2D and 3D autoencoderkl tutorials. Pass… 

    …ed PEP8 compliance.

Signed-off-by: Virginia Fernandez <[email protected]>
    Virginia Fernandez committed Sep 9, 2024
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  4. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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Commits on Sep 11, 2024

  1. Incorporate suggestions made by Eric (fix of tempfile import and use,… 

    … typo).

Signed-off-by: Virginia Fernandez <[email protected]>
    Virginia Fernandez committed Sep 11, 2024
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  2. Re-run 3D models to ensure that losses go down. 

    Signed-off-by: Virginia Fernandez <[email protected]>
    Virginia Fernandez committed Sep 11, 2024
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Commits on Sep 16, 2024

  1. Merge branch 'Project-MONAI:main' into main

    @virginiafdez
    virginiafdez authored Sep 16, 2024
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  2. Adding autoencoder info to README. 

    Signed-off-by: Virginia Fernandez <[email protected]>
    Virginia Fernandez committed Sep 16, 2024
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Commits on Sep 18, 2024

  1. Merge branch 'Project-MONAI:main' into main

    @virginiafdez
    virginiafdez authored Sep 18, 2024
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  2. Fix issue with the plots for autoencoder tutorials. Add anomaly detec… 

    …tion nbs to the README.

Signed-off-by: Virginia Fernandez <[email protected]>
    Virginia Fernandez committed Sep 18, 2024
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  3. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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    pre-commit-ci[bot] committed Sep 18, 2024
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Commits on Sep 20, 2024

  1. Add download = True to 3D NB. 

    Signed-off-by: Virginia Fernandez <[email protected]>
    Virginia Fernandez committed Sep 20, 2024
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  2. Tweak for the number of samples to render 

    Signed-off-by: Eric Kerfoot <[email protected]>
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    ericspod committed Sep 20, 2024
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  3. Fix 

    Signed-off-by: Eric Kerfoot <[email protected]>
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    ericspod committed Sep 20, 2024
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  4. Fix 

    Signed-off-by: Eric Kerfoot <[email protected]>
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    ericspod committed Sep 20, 2024
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