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1802-Add the monai label tutorial for cellprofiler #1803

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merged 6 commits into from
Aug 29, 2024

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binliunls
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Fixes #1802 .

Description

The tutorial to illustrate using MONAI label and CellProfiler to profile cell images.

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  • Avoid including large-size files in the PR.
  • Clean up long text outputs from code cells in the notebook.
  • For security purposes, please check the contents and remove any sensitive info such as user names and private key.
  • Ensure (1) hyperlinks and markdown anchors are working (2) use relative paths for tutorial repo files (3) put figure and graphs in the ./figure folder
  • Notebook runs automatically ./runner.sh -t <path to .ipynb file>

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@binliunls binliunls marked this pull request as ready for review August 28, 2024 14:47
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@KumoLiu KumoLiu left a comment

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Thanks for the PR, overall looks good to me.
Could you please also update the README file?

@binliunls
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Thanks for the PR, overall looks good to me. Could you please also update the README file?

Done

Signed-off-by: binliu <[email protected]>
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@KumoLiu KumoLiu left a comment

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LGTM, thanks.

@KumoLiu KumoLiu merged commit 2baabc5 into Project-MONAI:main Aug 29, 2024
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Add tutorial for VISTA2D+CellProfiler
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