ADd vista3d tutorial

[heyufan1995]

Fixes # .

Description

A few sentences describing the changes proposed in this pull request.

Checks

• Avoid including large-size files in the PR.
• Clean up long text outputs from code cells in the notebook.
• For security purposes, please check the contents and remove any sensitive info such as user names and private key.
• Ensure (1) hyperlinks and markdown anchors are working (2) use relative paths for tutorial repo files (3) put figure and graphs in the ./figure folder
• Notebook runs automatically ./runner.sh -t <path to .ipynb file>

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KumoLiu commented on 2024-08-26T03:11:03Z
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Please help remove the output for this cell, thanks!

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KumoLiu commented on 2024-08-26T03:11:03Z
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Line #3.        AsDiscrete,

Please help remove the unused import based on: https://github.com/Project-MONAI/tutorials/actions/runs/10530840790/job/29181611485?pr=1799#step:7:302

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KumoLiu commented on 2024-08-26T03:11:04Z
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Could you please help remove the error output from this cell?

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KumoLiu commented on 2024-08-26T03:11:05Z
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Could you please help adjust the order here to the correct order of calls, and add one line for Relabeld?

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KumoLiu commented on 2024-08-26T03:11:05Z
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Please help remove the output and check whether the model weights can be loaded correctly. Thanks!

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KumoLiu commented on 2024-08-26T03:11:06Z
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Line #1.    torch.load(os.path.join(root_dir, "model.pt"))

Also for this cell.

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KumoLiu commented on 2024-08-26T03:11:07Z
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Based on this: https://github.com/Project-MONAI/tutorials/actions/runs/10530840785/job/29181611520?pr=1799#step:7:8.

Could you please edit the output from the source, keep only the first and last few lines. Thanks.

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KumoLiu commented on 2024-08-26T03:11:08Z
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Line #2.    from monai.transforms import LoadImage

Based on: https://github.com/Project-MONAI/tutorials/actions/runs/10530840790/job/29181611485?pr=1799#step:7:323

Please move this import at top of file (Setup imports)

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KumoLiu commented on 2024-08-26T03:11:08Z
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Please help only keep one or two line pictures here, thanks!

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KumoLiu commented on 2024-08-26T03:11:09Z
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Line #1.    test_outputs[0].meta["filename_or_obj"]

I guess this cell can be removed?

[KumoLiu]

Hi @heyufan1995, thanks for the PR! Overall looks good to me, just leave several comments in line.
And does this checkpoint used in the tutorial the same as the model zoo? If yes I guess we may include the license info here?
cc @yiheng-wang-nv @mingxin-zheng @Nic-Ma

[KumoLiu]

Please also update this README file: https://github.com/Project-MONAI/tutorials/blob/main/README.md

[KumoLiu]

Hi @heyufan1995, thanks for the update, please also update the README file here: https://github.com/Project-MONAI/tutorials/blob/main/README.md#3d-segmentation.