refactor learn2reg_nlst_paired_lung_ct #2348
Workflow file for this run
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| name: premerge-notebooks | |
| on: | |
| # quick tests of modified notebooks for every pull request | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| concurrency: | |
| # automatically cancel the previously triggered workflows when there's a newer version | |
| group: build-gpu-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| if: github.repository == 'Project-MONAI/tutorials' | |
| container: | |
| image: nvcr.io/nvidia/pytorch:24.02-py3 | |
| options: --gpus all --ipc host | |
| runs-on: [self-hosted, linux, x64] | |
| steps: | |
| - name: Install MONAI | |
| id: monai-install | |
| run: | | |
| which python | |
| nvidia-smi | |
| rm -rf ../../MONAI/MONAI | |
| python -m pip install --upgrade pip wheel | |
| pip uninstall -y monai | |
| pip uninstall -y monai | |
| pip uninstall -y monai-weekly | |
| pip uninstall -y monai-weekly # make sure there's no existing installation | |
| BUILD_MONAI=0 python -m pip install git+https://github.com/Project-MONAI/MONAI#egg=MONAI | |
| python -m pip install -r https://raw.githubusercontent.com/Project-MONAI/MONAI/dev/requirements-dev.txt | |
| python -m pip install -U torch torchvision torchaudio | |
| - uses: actions/checkout@v3 | |
| - name: Notebook quick check | |
| shell: bash | |
| run: | | |
| git config --global --add safe.directory /__w/tutorials/tutorials | |
| git fetch origin main | |
| python -m pip install -r requirements.txt; python -m pip list | |
| python -c "import monai; monai.config.print_debug_info()" | |
| export CUDA_VISIBLE_DEVICES=0 | |
| git diff --name-only origin/main | while read line; do if [[ $line == *.ipynb ]]; then ./runner.sh -p " -and -wholename './${line}'"; fi; done; | |
| # [[ $line == *.ipynb ]] && ./runner.sh --file "$line" |