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[Fiche Taxon] Ajustement de la structure de config + Renommage "espèce" en "taxon" + Ajout test manquant de taxon_stats #3205

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Oct 7, 2024
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[Fiche Taxon] Ajustement de la structure de config + Renommage "espèce" en "taxon" + Ajout test manquant de taxon_stats #3205

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77ab1b9
feat: adjust species-sheet config structure
edelclaux Sep 27, 2024
a6fb2e7
feat: change "species_sheet" to "taxon_sheet"
edelclaux Oct 4, 2024
42c5863
test: adjust synthese_data fixtures to include date
edelclaux Oct 4, 2024
d47c179
test: adjust synthese_data fixtures to include altitudes
edelclaux Oct 4, 2024
a231ed5
test: add taxon_stats route test
edelclaux Oct 4, 2024
6b28d6c
fix: adjust comment
edelclaux Oct 7, 2024
a3c082d
fix: computeIndicatorFromDecsription --> computeIndicatorFromDescription
edelclaux Oct 7, 2024
4ccaccf
fix: boolean miscase in config.toml.example
edelclaux Oct 7, 2024
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6 changes: 3 additions & 3 deletions backend/geonature/core/gn_synthese/routes.py
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Original file line number Diff line number Diff line change
Expand Up @@ -957,11 +957,11 @@ def general_stats(permissions):
return data


@routes.route("/species_stats/<int:cd_ref>", methods=["GET"])
@routes.route("/taxon_stats/<int:cd_ref>", methods=["GET"])
@permissions.check_cruved_scope("R", get_scope=True, module_code="SYNTHESE")
@json_resp
def species_stats(scope, cd_ref):
"""Return stats about distinct species."""
def taxon_stats(scope, cd_ref):
"""Return stats for a specific taxon"""

area_type = request.args.get("area_type")

Expand Down
74 changes: 0 additions & 74 deletions backend/geonature/core/gn_synthese/synthese_config.py
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Expand Up @@ -100,77 +100,3 @@
{"prop": "dataset_name", "name": "JDD", "max_width": 200},
{"prop": "observers", "name": "observateur", "max_width": 200},
]


class DefaultProfile:
ENABLED = True
## DEFAULT PROFILE INDICATORS
LIST_INDICATORS = [
{
"name": "observation(s) valide(s)",
"matIcon": "search",
"field": "count_valid_data",
"type": "number",
},
{
"name": "Première observation",
"matIcon": "schedule",
"field": "first_valid_data",
"type": "date",
},
{
"name": "Dernière observation",
"matIcon": "search",
"field": "last_valid_data",
"type": "date",
},
{
"name": "Plage d'altitude(s)",
"matIcon": "terrain",
"field": ["altitude_min", "altitude_max"],
"unit": "m",
"type": "number",
},
]


class DefaultGeographicOverview:
pass


class DefaultSpeciesSheet:
## DEFAULT SPECIES SHEET INDICATORS
LIST_INDICATORS = [
{
"name": "observation(s)",
"matIcon": "search",
"field": "observation_count",
"type": "number",
},
{
"name": "observateur(s)",
"matIcon": "people",
"field": "observer_count",
"type": "number",
},
{
"name": "commune(s)",
"matIcon": "location_on",
"field": "area_count",
"type": "number",
},
{
"name": "Plage d'altitude(s)",
"matIcon": "terrain",
"unit": "m",
"type": "number",
"field": ["altitude_min", "altitude_max"],
},
{
"name": "Plage d'observation(s)",
"matIcon": "date_range",
"type": "date",
"field": ["date_min", "date_max"],
"separator": "-",
},
]
165 changes: 152 additions & 13 deletions backend/geonature/tests/fixtures.py
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Original file line number Diff line number Diff line change
Expand Up @@ -506,10 +506,24 @@ def sources_modules(modules):


def create_synthese(
geom, taxon, user, dataset, source, uuid=func.uuid_generate_v4(), cor_observers=[], **kwargs
geom,
taxon,
user,
dataset,
source,
uuid=func.uuid_generate_v4(),
cor_observers=[],
date_min="",
date_max="",
altitude_min=800,
altitude_max=1200,
**kwargs,
):
now = datetime.datetime.now()

date_min = date_min if date_min else now
date_max = date_max if date_max else now

return Synthese(
id_source=source.id_source,
id_module=source.id_module,
Expand All @@ -522,8 +536,10 @@ def create_synthese(
the_geom_4326=geom,
the_geom_point=geom,
the_geom_local=func.ST_Transform(geom, 2154), # FIXME
date_min=now,
date_max=now,
date_min=date_min,
date_max=date_max,
altitude_min=altitude_min,
altitude_max=altitude_max,
cor_observers=cor_observers,
**kwargs,
)
Expand All @@ -534,19 +550,138 @@ def synthese_data(app, users, datasets, source, sources_modules):
point1 = Point(5.92, 45.56)
point2 = Point(-1.54, 46.85)
point3 = Point(-3.486786, 48.832182)
date_1 = datetime.datetime(2024, 10, 2, 11, 22, 33)
date_2 = datetime.datetime(2024, 10, 3, 8, 9, 10)
date_3 = datetime.datetime(2024, 10, 4, 17, 4, 9)
date_4 = datetime.datetime(2024, 10, 5, 22, 22, 22)
altitude_1 = 800
altitude_2 = 900
altitude_3 = 1000
altitude_4 = 1100

data = {}
with db.session.begin_nested():
for name, cd_nom, point, ds, comment_description, source_m in [
for (
name,
cd_nom,
point,
ds,
comment_description,
source_m,
date_min,
date_max,
altitude_min,
altitude_max,
) in [
# Donnnées de gypaète : possède des statuts de protection nationale
("obs1", 2852, point1, datasets["own_dataset"], "obs1", sources_modules[0]),
("obs2", 212, point2, datasets["own_dataset"], "obs2", sources_modules[0]),
("obs3", 2497, point3, datasets["own_dataset"], "obs3", sources_modules[1]),
("p1_af1", 713776, point1, datasets["belong_af_1"], "p1_af1", sources_modules[1]),
("p1_af1_2", 212, point1, datasets["belong_af_1"], "p1_af1_2", sources_modules[1]),
("p1_af2", 212, point1, datasets["belong_af_2"], "p1_af2", sources_modules[1]),
("p2_af2", 2497, point2, datasets["belong_af_2"], "p2_af2", source),
("p2_af1", 2497, point2, datasets["belong_af_1"], "p2_af1", source),
("p3_af3", 2497, point3, datasets["belong_af_3"], "p3_af3", source),
(
"obs1",
2852,
point1,
datasets["own_dataset"],
"obs1",
sources_modules[0],
date_1,
date_1,
altitude_1,
altitude_1,
),
(
"obs2",
212,
point2,
datasets["own_dataset"],
"obs2",
sources_modules[0],
date_1,
date_4,
altitude_1,
altitude_4,
),
(
"obs3",
2497,
point3,
datasets["own_dataset"],
"obs3",
sources_modules[1],
date_2,
date_3,
altitude_2,
altitude_3,
),
(
"p1_af1",
713776,
point1,
datasets["belong_af_1"],
"p1_af1",
sources_modules[1],
date_1,
date_3,
altitude_1,
altitude_3,
),
(
"p1_af1_2",
212,
point1,
datasets["belong_af_1"],
"p1_af1_2",
sources_modules[1],
date_3,
date_3,
altitude_3,
altitude_3,
),
(
"p1_af2",
212,
point1,
datasets["belong_af_2"],
"p1_af2",
sources_modules[1],
date_3,
date_4,
altitude_3,
altitude_4,
),
(
"p2_af2",
2497,
point2,
datasets["belong_af_2"],
"p2_af2",
source,
date_1,
date_2,
altitude_1,
altitude_2,
),
(
"p2_af1",
2497,
point2,
datasets["belong_af_1"],
"p2_af1",
source,
date_1,
date_1,
altitude_1,
altitude_1,
),
(
"p3_af3",
2497,
point3,
datasets["belong_af_3"],
"p3_af3",
source,
date_2,
date_2,
altitude_2,
altitude_2,
),
]:
unique_id_sinp = (
"f4428222-d038-40bc-bc5c-6e977bbbc92b" if not data else func.uuid_generate_v4()
Expand All @@ -563,6 +698,10 @@ def synthese_data(app, users, datasets, source, sources_modules):
source_m,
unique_id_sinp,
[users["admin_user"], users["user"]],
date_min,
date_max,
altitude_min,
altitude_max,
**kwargs,
)
db.session.add(s)
Expand Down
57 changes: 57 additions & 0 deletions backend/geonature/tests/test_synthese.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1114,6 +1114,63 @@ def test_general_stat(self, users):

assert response.status_code == 200

def test_taxon_stats(self, synthese_data, users):
set_logged_user(self.client, users["stranger_user"])

AREA_TYPE_VALID = "COM"
AREA_TYPE_INVALID = "UNDEFINED"
CD_REF_INVALID = 987654321
CD_REF_INVALID_STATS = {
"altitude_max": None,
"altitude_min": None,
"area_count": 0,
"cd_ref": CD_REF_INVALID,
"date_max": None,
"date_min": None,
"observation_count": 0,
"observer_count": 0,
}
CD_REF_VALID = 2497
CD_REF_VALID_STATS = {
"altitude_max": 900,
"altitude_min": 800,
"area_count": 2,
"cd_ref": CD_REF_VALID,
"date_max": "Thu, 03 Oct 2024 08:09:10 GMT",
"date_min": "Wed, 02 Oct 2024 11:22:33 GMT",
"observation_count": 3,
"observer_count": 1,
}

# Missing area_type parameter
response = self.client.get(
url_for("gn_synthese.taxon_stats", cd_ref=CD_REF_VALID),
)
assert response.status_code == 400
assert response.json["description"] == "Missing area_type parameter"

# Invalid area_type parameter
response = self.client.get(
url_for("gn_synthese.taxon_stats", cd_ref=CD_REF_VALID, area_type=AREA_TYPE_INVALID),
)
assert response.status_code == 400
assert response.json["description"] == "Invalid area_type"

# Invalid cd_ref parameter
response = self.client.get(
url_for("gn_synthese.taxon_stats", cd_ref=CD_REF_INVALID, area_type=AREA_TYPE_VALID),
)
assert response.status_code == 200
assert response.get_json() == CD_REF_INVALID_STATS

# Invalid cd_ref parameter
response = self.client.get(
url_for("gn_synthese.taxon_stats", cd_ref=CD_REF_VALID, area_type=AREA_TYPE_VALID),
)
response_json = response.get_json()
assert response.status_code == 200
assert response.get_json() == CD_REF_VALID_STATS

def test_get_one_synthese_record(self, app, users, synthese_data):
response = self.client.get(
url_for("gn_synthese.get_one_synthese", id_synthese=synthese_data["obs1"].id_synthese)
Expand Down
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