Use lz4 compression as default (as reccommended here https://github.c…

…om/facebook/rocksdb/wiki/Compression#configuration) Remove ncore debug
Phelimb · Jul 8, 2018 · 1680355 · 1680355
1 parent adc5be5
commit 1680355
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/bigsi/graph/probabilistic.py b/bigsi/graph/probabilistic.py
@@ -90,7 +90,7 @@ def chunks(l, n):
 
 
 def unpack_bas(bas, j):
-    logger.debug("ncores: %i" % j)
+#    logger.debug("ncores: %i" % j)
     if j == 0:
         res = unpack_and_sum(bas)
         return res

diff --git a/bigsi/storage/base.py b/bigsi/storage/base.py
@@ -568,7 +568,7 @@ def __init__(self, filename=None, mode="r", cachesize=4, decode=None, store_int_
             else:
                 create_if_missing=True
             self.storage  = rocksdb.DB(self.db_file, rocksdb.Options(create_if_missing=create_if_missing,
-                compression=rocksdb.CompressionType.no_compression))
+                compression=rocksdb.CompressionType.lz4_compression))
         except AttributeError:
             raise ValueError(
                 "Please install rocksdb to use rocks DB storage")