The "01.data cleaning.R" script was used to clean and combined clinical (recoding/cleaning/create new variables) and
radiomics feature data (scale from -1 to 1).
The code generate radiomics.rds and clinical.rds that are used in the later analyses/modeling.
Other R scripts are not useful anymore.
Use the Rmd.
"Stable features.Rmd" calculate the ICC / CCC of each feature and select the best features with CCC ≥ 0.95.
"survival modeling.Rmd" is the last modeling script using a Decision tree.
"modeling-outcomes-balanced" build multiple models and choosing the best to predict recurrence Yes/No with a balanced data.