Support "none" option.

PennLINC · Sep 18, 2024 · a7cba42 · a7cba42
1 parent bb4c632
commit a7cba42
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/xcp_d/workflows/base.py b/xcp_d/workflows/base.py
@@ -419,11 +419,15 @@ def init_single_subject_wf(subject_id: str):
                 file_format=config.workflow.file_format,
                 target_space=target_space,
             )
+            if config.execution.confounds_config != "none":
+                confounds_config = yaml.safe_load(config.execution.confounds_config.read_text())
+            else:
+                confounds_config = None
             confounds_dict = collect_confounds(
                 bold_file=bold_file,
                 preproc_dataset=config.execution.layout,
                 derivatives_datasets=config.execution.derivatives,
-                confound_spec=yaml.safe_load(config.execution.confounds_config.read_text()),
+                confound_spec=confounds_config,
             )
             run_data["confounds"] = confounds_dict