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[CI] Swap synthstrip for bet when sloppy mode is chosen #817

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merged 14 commits into from
Sep 2, 2024

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mattcieslak
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synthstrip is tough on the CI builds because it requires a lot of memory. This PR swaps in BET for synthstrip when the --sloppy flag is specified

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codecov-commenter commented Aug 30, 2024

Codecov Report

Attention: Patch coverage is 23.21429% with 43 lines in your changes missing coverage. Please review.

Project coverage is 28.12%. Comparing base (634483f) to head (aedae87).

Files with missing lines Patch % Lines
qsiprep/interfaces/freesurfer.py 28.12% 23 Missing ⚠️
qsiprep/interfaces/anatomical.py 20.00% 8 Missing ⚠️
qsiprep/workflows/anatomical/volume.py 0.00% 6 Missing ⚠️
qsiprep/interfaces/images.py 33.33% 4 Missing ⚠️
qsiprep/workflows/dwi/hmc.py 0.00% 2 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##           master     #817      +/-   ##
==========================================
- Coverage   28.13%   28.12%   -0.02%     
==========================================
  Files          69       69              
  Lines       10032    10079      +47     
  Branches     1298     1302       +4     
==========================================
+ Hits         2823     2835      +12     
- Misses       7111     7146      +35     
  Partials       98       98              

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@mattcieslak mattcieslak merged commit aa43d3b into master Sep 2, 2024
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2 participants