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[RF] Remove the recon workflows from QSIPrep #802

Merged
merged 36 commits into from
Aug 14, 2024
Merged

[RF] Remove the recon workflows from QSIPrep #802

merged 36 commits into from
Aug 14, 2024

Commits on Aug 9, 2024

  1. remove recon workflows

    @mattcieslak
    mattcieslak committed Aug 9, 2024
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  2. more deletions

    @mattcieslak
    mattcieslak committed Aug 9, 2024
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  3. remove references to recon

    @mattcieslak
    mattcieslak committed Aug 9, 2024
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Commits on Aug 10, 2024

  1. continued

    @mattcieslak
    mattcieslak committed Aug 10, 2024
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Commits on Aug 11, 2024

  1. reports

    @mattcieslak
    mattcieslak committed Aug 11, 2024
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Commits on Aug 12, 2024

  1. Send logs to output directory

    @mattcieslak
    mattcieslak committed Aug 12, 2024
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  2. lint + output_dir

    @mattcieslak
    mattcieslak committed Aug 12, 2024
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  3. again

    @mattcieslak
    mattcieslak committed Aug 12, 2024
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  4. Works locally

    @mattcieslak
    mattcieslak committed Aug 12, 2024
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  5. Fix up tests.

    @tsalo
    tsalo committed Aug 12, 2024
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  6. qsiprep_dir --> output_dir

    @tsalo
    tsalo committed Aug 12, 2024
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  7. No out_base_path.

    @tsalo
    tsalo committed Aug 12, 2024
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  8. Update test_cli.py

    @tsalo
    tsalo committed Aug 12, 2024
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  9. Update.

    @tsalo
    tsalo committed Aug 12, 2024
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  10. Update base.py

    @tsalo
    tsalo committed Aug 12, 2024
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  11. Update reports.py

    @tsalo
    tsalo committed Aug 12, 2024
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  12. Remove exec_mode.

    @tsalo
    tsalo committed Aug 12, 2024
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  13. Remove pipeline_type.

    @tsalo
    tsalo committed Aug 12, 2024
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Commits on Aug 13, 2024

  1. Replace DerivativesDataSink.

    @tsalo
    tsalo committed Aug 13, 2024
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  2. Run isort.

    @tsalo
    tsalo committed Aug 13, 2024
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  3. Update io_spec.json

    @tsalo
    tsalo committed Aug 13, 2024
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  4. Update io_spec.json

    @tsalo
    tsalo committed Aug 13, 2024
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  5. Fix.

    @tsalo
    tsalo committed Aug 13, 2024
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  6. Update expected outputs.

    @tsalo
    tsalo committed Aug 13, 2024
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  7. Fix stuff.

    @tsalo
    tsalo committed Aug 13, 2024
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  8. Update merge.py

    @tsalo
    tsalo committed Aug 13, 2024
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  9. Update io_spec.json

    @tsalo
    tsalo committed Aug 13, 2024
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  10. Drop reportlets_dir.

    @tsalo
    tsalo committed Aug 13, 2024
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  11. Update.

    @tsalo
    tsalo committed Aug 13, 2024
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  12. Generalize fix_multi_source_name.

    @tsalo
    tsalo committed Aug 13, 2024
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  13. Update misc.py

    @tsalo
    tsalo committed Aug 13, 2024
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  14. Update misc.py

    @tsalo
    tsalo committed Aug 13, 2024
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  15. Update misc.py

    @tsalo
    tsalo committed Aug 13, 2024
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Commits on Aug 14, 2024

  1. Fix up tests.

    @tsalo
    tsalo committed Aug 14, 2024
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  2. Update expected outputs.

    @tsalo
    tsalo committed Aug 14, 2024
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  3. Update expected outputs.

    @tsalo
    tsalo committed Aug 14, 2024
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