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Update Dockerfile
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tsalo committed Aug 2, 2023
1 parent ea32388 commit 5e331e1
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13 changes: 0 additions & 13 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -88,13 +88,6 @@ RUN conda \
python=3.10 \
conda-build \
pip=23 \
fsl-bet2=2111.0 \
fsl-flirt=2111.0 \
fsl-fast4=2111.0 \
fsl-fugue=2201.2 \
fsl-mcflirt=2111.0 \
fsl-miscmaths=2203.2 \
fsl-topup=2203.1 \
convert3d=1.3.0 \
matplotlib \
mkl=2021.2 \
Expand Down Expand Up @@ -182,12 +175,6 @@ RUN npm install -g svgo
# Install bids-validator
RUN npm install -g [email protected]

# Install FSL from old ASLPrep version
COPY --from=build_fsl /opt/fsl-6.0.5/ /opt/fsl-6.0.5/
ENV FSLDIR="/opt/fsl-6.0.5" \
PATH="/opt/fsl-6.0.5/bin:$PATH" \
FSLOUTPUTTYPE="NIFTI_GZ"

# Unless otherwise specified each process should only use one thread - nipype
# will handle parallelization
ENV MKL_NUM_THREADS=1 \
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