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Replace AtlasPack 0.0.5 atlases with AtlasPack 0.1.0 atlases (#334)
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* Fix path in run_local_tests.py.

* Print the M0 filenames.

* Use AtlasPack 0.1.0 atlases.

* Update config.yml

* Update the atlases.
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@tsalo
tsalo authored Nov 2, 2023
1 parent fd1e4f7 commit f8443e7
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Showing 15 changed files with 592 additions and 589 deletions.
2 changes: 1 addition & 1 deletion .circleci/config.yml
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Expand Up @@ -4,7 +4,7 @@ orbs:

.dockersetup: &dockersetup
docker:
- image: pennlinc/aslprep_build:main
- image: pennlinc/aslprep_build:0.0.4
working_directory: /src/aslprep

runinstall: &runinstall
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2 changes: 1 addition & 1 deletion Dockerfile
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@@ -1,4 +1,4 @@
FROM pennlinc/aslprep_build:0.0.3
FROM pennlinc/aslprep_build:0.0.4

# Install aslprep
COPY . /src/aslprep
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180 changes: 90 additions & 90 deletions aslprep/tests/data/expected_outputs_examples_pasl_multipld.txt
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aslprep/atlas-4S1052Parcels_dseg.json
aslprep/atlas-4S1052Parcels_dseg.tsv
aslprep/atlas-4S152Parcels_dseg.json
aslprep/atlas-4S152Parcels_dseg.tsv
aslprep/atlas-4S252Parcels_dseg.json
aslprep/atlas-4S252Parcels_dseg.tsv
aslprep/atlas-4S352Parcels_dseg.json
aslprep/atlas-4S352Parcels_dseg.tsv
aslprep/atlas-4S452Parcels_dseg.json
aslprep/atlas-4S452Parcels_dseg.tsv
aslprep/atlas-4S552Parcels_dseg.json
aslprep/atlas-4S552Parcels_dseg.tsv
aslprep/atlas-4S652Parcels_dseg.json
aslprep/atlas-4S652Parcels_dseg.tsv
aslprep/atlas-4S752Parcels_dseg.json
aslprep/atlas-4S752Parcels_dseg.tsv
aslprep/atlas-4S852Parcels_dseg.json
aslprep/atlas-4S852Parcels_dseg.tsv
aslprep/atlas-4S952Parcels_dseg.json
aslprep/atlas-4S952Parcels_dseg.tsv
aslprep/atlas-4S1056Parcels_dseg.json
aslprep/atlas-4S1056Parcels_dseg.tsv
aslprep/atlas-4S156Parcels_dseg.json
aslprep/atlas-4S156Parcels_dseg.tsv
aslprep/atlas-4S256Parcels_dseg.json
aslprep/atlas-4S256Parcels_dseg.tsv
aslprep/atlas-4S356Parcels_dseg.json
aslprep/atlas-4S356Parcels_dseg.tsv
aslprep/atlas-4S456Parcels_dseg.json
aslprep/atlas-4S456Parcels_dseg.tsv
aslprep/atlas-4S556Parcels_dseg.json
aslprep/atlas-4S556Parcels_dseg.tsv
aslprep/atlas-4S656Parcels_dseg.json
aslprep/atlas-4S656Parcels_dseg.tsv
aslprep/atlas-4S756Parcels_dseg.json
aslprep/atlas-4S756Parcels_dseg.tsv
aslprep/atlas-4S856Parcels_dseg.json
aslprep/atlas-4S856Parcels_dseg.tsv
aslprep/atlas-4S956Parcels_dseg.json
aslprep/atlas-4S956Parcels_dseg.tsv
aslprep/atlas-Glasser_dseg.json
aslprep/atlas-Glasser_dseg.tsv
aslprep/atlas-Gordon_dseg.json
Expand All @@ -32,26 +32,26 @@ aslprep/logs/CITATION.html
aslprep/logs/CITATION.md
aslprep/logs/CITATION.tex
aslprep/qc.json
aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S1052Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S152Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S252Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S352Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S452Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S552Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S652Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S752Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S852Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S952Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json
aslprep/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz
aslprep/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json
Expand All @@ -66,56 +66,56 @@ aslprep/sub-01/ses-BAS1
aslprep/sub-01/ses-BAS1/perf
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_aslref.json
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_aslref.nii.gz
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S1052Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S1052Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S1052Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S1052Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S1052Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S152Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S152Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S152Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S152Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S152Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S252Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S252Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S252Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S252Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S252Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S352Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S352Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S352Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S352Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S352Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S452Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S452Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S452Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S452Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S452Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S552Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S552Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S552Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S552Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S552Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S652Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S652Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S652Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S652Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S652Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S752Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S752Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S752Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S752Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S752Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S852Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S852Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S852Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S852Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S852Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S952Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S952Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S952Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S952Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S952Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S1056Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S1056Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S1056Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S1056Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S1056Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S156Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S156Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S156Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S156Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S156Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S256Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S256Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S256Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S256Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S256Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S356Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S356Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S356Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S356Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S356Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S456Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S456Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S456Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S456Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S456Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S556Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S556Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S556Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S556Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S556Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S656Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S656Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S656Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S656Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S656Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S756Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S756Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S756Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S756Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S756Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S856Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S856Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S856Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S856Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S856Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S956Parcels_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S956Parcels_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S956Parcels_desc-basil_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S956Parcels_desc-score_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-4S956Parcels_desc-scrub_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Glasser_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Glasser_desc-basilGM_cbf.tsv
aslprep/sub-01/ses-BAS1/perf/sub-01_ses-BAS1_atlas-Glasser_desc-basil_cbf.tsv
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