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{WIP} LPJ-GUESS SDA Couplers#2660

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istfer wants to merge 68 commits intoPecanProject:developPecanProject/pecan:developfrom istfer:LPJGUESS_SDAistfer/pecan:LPJGUESS_SDACopy head branch name to clipboard

+10,271-36

Commits

Commits on Jun 8, 2019

• started new read state function

  istfer

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  84f3c25

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• add helper function that locates function

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• add helper function that finds closing paranthesis

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Commits on Jun 10, 2019

• add function that finds stream

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Commits on Jun 13, 2019

• start reading

  istfer

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• first read

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• extract typedef enums

  istfer

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• read typedef enum

  istfer

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• read Historic

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• read vector

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Commits on Jun 14, 2019

• read vector with const int

  istfer

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• read in parameters header too

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• case fo seed

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Commits on Jun 15, 2019

• ready to loop over stands

  istfer

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• start looping over patches

  istfer

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• reading individual class

  istfer

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Commits on Jun 16, 2019

• first pass at read individual

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Commits on Jun 17, 2019

• finish individual

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• few more flexibility

  istfer

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• read matrix

  istfer

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• getting ready to read sompool

  istfer

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Commits on Jun 18, 2019

• catch one more case

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• finished soil

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• adding more hardcoded constants for now

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• getting ready to read fluxes

  istfer

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• finished patch

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• finished reading all - first pass

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• Added allometry and allocation functions from LPJ-GUESS. Also summing variables to a per-gridcells basis, and first start on updating the state.

  MagicForrest

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Commits on Jun 19, 2019

• read meta.bin

  istfer

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• allocation() function now correctly included

  MagicForrest

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• k_latosa is sapwood_ratio in pecan

  istfer

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• Merge branch 'develop' of github.com:PecanProject/pecan into LPJGUESS_SDA

  istfer

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• small rearrangement for compilation

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• add new par minmoist_est

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• Allocation of biomass now also works. It seems to fail when scaling biomass down ~0.55 or less. cmass_debt is not included in the calculation and scaled like the other pools.

  MagicForrest

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Commits on Jun 20, 2019

• using phenology and leafphysiognomy

  istfer

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• Added allometry() call. Gives the target results for a biomass change doen to about 0.7. Also updated the way of tracking individuals to better facilitate looping.

  MagicForrest

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• Factorised the adjustDensity and adjustBiomass code.

  MagicForrest

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Commits on Jun 21, 2019

• few modifications for PalEON model version

  istfer

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• parsing files some more

  istfer

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• Also scale and adjust N pools.

  MagicForrest

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• Mostly code tidying/documentation ahead of merging.

  MagicForrest

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• Merge branch 'LPJGUESS_SDA' into LPJGUESS_SDA

  istfer

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  2b4e6b9

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• Merge pull request #2 from MagicForrest/LPJGUESS_SDA

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• modifying function for PalEON version

  istfer

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• Merge branch 'LPJGUESS_SDA' of https://github.com/istfer/pecan into LPJGUESS_SDA

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Commits on Jun 22, 2019

• read new PhotosynthesisResults

  istfer

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Commits on Jun 24, 2019

• updates for the new model version, first pass finished

  istfer

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• Documented adjustBiomass() and cleaned the fucntion a little.

  MagicForrest

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• start read_restart.LPJGUESS

  istfer

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• LPJGUESS uses exact days and will require split inputs function

  istfer

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• backbone of read_restart

  istfer

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• Added HEIGHT_MAX as an argument to over-ride the LPJ-GUESS 150m max height.

  MagicForrest

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• Merge branch 'LPJGUESS_SDA' of github.com:MagicForrest/pecan into LPJGUESS_SDA

  MagicForrest

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Commits on Jun 25, 2019

• start split inputs for LPJGUESS

  istfer

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Commits on Jun 26, 2019

• number of individuals are back

  istfer

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Commits on Jun 27, 2019

• Just coding style

  MagicForrest

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• Merge branch 'LPJGUESS_SDA' into LPJGUESS_SDA

  istfer

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• Merge pull request #3 from MagicForrest/LPJGUESS_SDA

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  istfer

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• define state year

  istfer

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• Merge branch 'LPJGUESS_SDA' of https://github.com/istfer/pecan into LPJGUESS_SDA

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Commits on Jun 28, 2019

• add doc tags

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• LPJGUESS package build

  istfer

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• no need for single quote

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• Merge branch 'develop' of github.com:PecanProject/pecan into LPJGUESS_SDA

  istfer

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Commits on Jul 17, 2020

• Merge branch 'develop' of github.com:PecanProject/pecan into LPJGUESS_SDA

  istfer

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Commits on May 4, 2023

• Merge branch 'develop' into LPJGUESS_SDA

  infotroph

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Commits on Nov 8, 2024

• Merge branch 'develop' into LPJGUESS_SDA

  mdietze

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