removed un-needed imports

Pathogen-Genomics-Cymru · Dec 6, 2023 · 78f1498 · 78f1498
1 parent 0763b00
commit 78f1498
Showing 1 changed file with 0 additions and 6 deletions.
diff --git a/bin/identify_tophit_and_contaminants2.py b/bin/identify_tophit_and_contaminants2.py
@@ -6,10 +6,6 @@
 import argparse
 import re
 import copy
-import boto3
-import sys
-import configparser
-import pathlib
 
 # define process requirements function
 def process_requirements(args):
@@ -22,8 +18,6 @@ def process_requirements(args):
     myco_dir = args[6]
     prev_species_json = args[7]
 
-    credential_file = "~/.aws/config"
-
     """
     # check if input files exist and not empty
     if not os.path.exists(afanc_json):