change in kraken parser to stop bug where names with non-alphanumeric… #16
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name: pytest | |
on: | |
push: | |
branches: | |
- main | |
paths: | |
- 'bin/*.py' | |
- 'tests/python/*.py' | |
workflow_dispatch: | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python 3.8 | |
uses: actions/setup-python@v4 | |
with: | |
python-version: '3.8' | |
- name: Install dependencies | |
run: python -m pip install --upgrade pip biopython pysam pytest | |
- name: Test with pytest | |
working-directory: tests/python | |
run: | | |
pytest |