Merge pull request #108 from Pathogen-Genomics-Cymru/bcg #15

	name: pytest
	on:
	push:
	branches:
	- main
	paths:
	- 'bin/*.py'
	- 'tests/python/*.py'

	workflow_dispatch:

	jobs:

	build:

	runs-on: ubuntu-latest

	steps:

	- uses: actions/checkout@v3
	- name: Set up Python 3.8
	uses: actions/setup-python@v4
	with:
	python-version: '3.8'

	- name: Install dependencies
	run: python -m pip install --upgrade pip biopython pysam pytest

	- name: Test with pytest
	working-directory: tests/python
	run: \|
	pytest

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