This should fix the regex issue.

.github/workflows/test.yml

@@ -94,12 +94,9 @@ jobs:
         if [ "$CURRENT_VERSION" == "$HIGHER_VERSION" ]; then
           IFS='.' read -r -a VERSION_PARTS <<< "$CURRENT_VERSION"
           PATCH=$((VERSION_PARTS[2] + 1))
-          NEW_VERSION=$(python -c "from packaging.version import parse as parse_version; \
-                             print(max(parse_version('$CURRENT_VERSION'), parse_version('$LATEST_TAG')))")
-
-          echo "New version: $NEW_VERSION"
-            sed -i "s/version='[0-9]\+\.[0-9]\+\.[0-9]\+'/version='$NEW_VERSION'/" setup.py
-          # sed -i "s/version='\([0-9]\+\.[0-9]\+\.\)[0-9]\+'/'version='\1$PATCH'/" setup.py
+          NEW_VERSION="${VERSION_PARTS[0]}.${VERSION_PARTS[1]}.$PATCH"
+          echo "Incremented version: $NEW_VERSION"
+          sed -i "s/version='\([0-9]\+\.[0-9]\+\.\)[0-9]\+'/version='\1$PATCH'/" setup.py
 
           # Commit and push the updated setup.py
           git config --local user.email "[email protected]"

setup.py

@@ -2,7 +2,7 @@
 
 setup(
     name='coderdata',  
-    'version='0.1.4',   
+    version='0.1.4',   
     author='Jeremy Jacobson',
     author_email='[email protected]',
     description='A package to download, load, and process multiple benchmark multi-omic drug response datasets',