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refactor: add 'Filename' column; rename 'time' column #114

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May 8, 2024
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refactor: add 'Filename' column; rename 'time' column #114

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34 changes: 26 additions & 8 deletions src/stepcount/stepcount.py
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Original file line number Diff line number Diff line change
Expand Up @@ -165,31 +165,43 @@ def main():
steps_summary['hourly'],
enmo_summary['hourly'],
], axis=1)
hourly.to_csv(f"{outdir}/{basename}-Hourly.csv.gz")
hourly.index.name = 'Time'
hourly.reset_index(inplace=True)
hourly.insert(0, 'Filename', info['Filename']) # add filename for reference
hourly.to_csv(f"{outdir}/{basename}-Hourly.csv.gz", index=False)
del hourly # free memory

# Save hourly data, adjusted
hourly_adj = pd.concat([
steps_summary_adj['hourly'],
enmo_summary_adj['hourly'],
], axis=1)
hourly_adj.to_csv(f"{outdir}/{basename}-HourlyAdjusted.csv.gz")
hourly_adj.index.name = 'Time'
hourly_adj.reset_index(inplace=True)
hourly_adj.insert(0, 'Filename', info['Filename']) # add filename for reference
hourly_adj.to_csv(f"{outdir}/{basename}-HourlyAdjusted.csv.gz", index=False)
del hourly_adj # free memory

# Save minutely data
minutely = pd.concat([
steps_summary['minutely'],
enmo_summary['minutely'],
], axis=1)
minutely.to_csv(f"{outdir}/{basename}-Minutely.csv.gz")
minutely.index.name = 'Time'
minutely.reset_index(inplace=True)
minutely.insert(0, 'Filename', info['Filename']) # add filename for reference
minutely.to_csv(f"{outdir}/{basename}-Minutely.csv.gz", index=False)
del minutely # free memory

# Save minutely data, adjusted
minutely_adj = pd.concat([
steps_summary_adj['minutely'],
enmo_summary_adj['minutely'],
], axis=1)
minutely_adj.to_csv(f"{outdir}/{basename}-MinutelyAdjusted.csv.gz")
minutely_adj.index.name = 'Time'
minutely_adj.reset_index(inplace=True)
minutely_adj.insert(0, 'Filename', info['Filename']) # add filename for reference
minutely_adj.to_csv(f"{outdir}/{basename}-MinutelyAdjusted.csv.gz", index=False)
del minutely_adj # free memory

# Save daily data
Expand All @@ -198,7 +210,10 @@ def main():
cadence_summary['daily'],
enmo_summary['daily'],
], axis=1)
daily.to_csv(f"{outdir}/{basename}-Daily.csv.gz")
daily.index.name = 'Date'
daily.reset_index(inplace=True)
daily.insert(0, 'Filename', info['Filename']) # add filename for reference
daily.to_csv(f"{outdir}/{basename}-Daily.csv.gz", index=False)
# del daily # still needed for printing

# Save daily data, adjusted
Expand All @@ -207,16 +222,19 @@ def main():
cadence_summary_adj['daily'],
enmo_summary_adj['daily'],
], axis=1)
daily_adj.to_csv(f"{outdir}/{basename}-DailyAdjusted.csv.gz")
daily_adj.index.name = 'Date'
daily_adj.reset_index(inplace=True)
daily_adj.insert(0, 'Filename', info['Filename']) # add filename for reference
daily_adj.to_csv(f"{outdir}/{basename}-DailyAdjusted.csv.gz", index=False)
# del daily_adj # still needed for printing

# Print
print("\nSummary\n-------")
print(json.dumps(info, indent=4, cls=NpEncoder))
print("\nEstimated Daily Stats\n---------------------")
print(daily)
print(daily.set_index('Date').drop(columns='Filename'))
print("\nEstimated Daily Stats (Adjusted)\n---------------------")
print(daily_adj)
print(daily_adj.set_index('Date').drop(columns='Filename'))
print("\nOutput files saved in:", outdir)

after = time.time()
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