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fix: use median in impute_days for cadence only #112

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May 4, 2024
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fix: use median in impute_days for cadence only #112

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6 changes: 3 additions & 3 deletions src/stepcount/stepcount.py
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Original file line number Diff line number Diff line change
Expand Up @@ -501,9 +501,9 @@ def _cadence_p95(x, steptol, walktol=30):
# adjusted estimates first form a 7-day representative week before final aggregation
# TODO: 7-day padding for shorter recordings
# TODO: maybe impute output daily_cadence? but skip user-excluded days
day_of_week_cadence_peak1 = impute_days(daily_cadence_peak1).groupby(daily_cadence_peak1.index.weekday).median()
day_of_week_cadence_peak30 = impute_days(daily_cadence_peak30).groupby(daily_cadence_peak30.index.weekday).median()
day_of_week_cadence_p95 = impute_days(daily_cadence_p95).groupby(daily_cadence_p95.index.weekday).median()
day_of_week_cadence_peak1 = impute_days(daily_cadence_peak1, method='median').groupby(daily_cadence_peak1.index.weekday).median()
day_of_week_cadence_peak30 = impute_days(daily_cadence_peak30, method='median').groupby(daily_cadence_peak30.index.weekday).median()
day_of_week_cadence_p95 = impute_days(daily_cadence_p95, method='median').groupby(daily_cadence_p95.index.weekday).median()

cadence_peak1 = day_of_week_cadence_peak1.median()
cadence_peak30 = day_of_week_cadence_peak30.median()
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