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docs: full urls; minor improves #237

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16 changes: 9 additions & 7 deletions README.md
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
![Accelerometer data processing overview](docs/source/accelerometerLogo.png)
![Accelerometer data processing overview](https://raw.githubusercontent.com/OxWearables/biobankAccelerometerAnalysis/master/docs/source/accelerometerLogo.png)

[![Github all releases](https://img.shields.io/github/release/activityMonitoring/biobankAccelerometerAnalysis.svg)](https://github.com/activityMonitoring/biobankAccelerometerAnalysis/releases/)
![install](https://github.com/activityMonitoring/biobankAccelerometerAnalysis/workflows/install/badge.svg)
Expand All @@ -11,7 +11,9 @@ A tool to extract meaningful health information from large accelerometer dataset

## Install

We recommend using **Anaconda**:
*Minimum requirements*: Python>=3.7, Java 8 (1.8)

The following instructions make use of Anaconda to meet the minimum requirements:

1. Download & install [Miniconda](https://docs.conda.io/en/latest/miniconda.html) (light-weight version of Anaconda).
1. (Windows) Once installed, launch the **Anaconda Prompt**.
Expand Down Expand Up @@ -64,7 +66,7 @@ To plot the activity profile:
$ accPlot data/sample-timeSeries.csv.gz
<output plot written to data/sample-timeSeries-plot.png>
```
![Time series plot](docs/source/samplePlot.png)
![Time series plot](https://raw.githubusercontent.com/OxWearables/biobankAccelerometerAnalysis/master/docs/source/samplePlot.png)

### Troubleshooting
Some systems may face issues with Java when running the script. If this is your case, try fixing OpenJDK to version 8:
Expand All @@ -78,17 +80,17 @@ taken to extract summary physical activity information from raw accelerometer
data. To minimise error and bias, our tool uses published methods to calibrate,
resample, and summarise the accelerometer data.

![Accelerometer data processing overview](docs/source/accMethodsOverview.png)
![Activity classification](docs/source/accClassification.png)
![Accelerometer data processing overview](https://raw.githubusercontent.com/OxWearables/biobankAccelerometerAnalysis/master/docs/source/accMethodsOverview.png)
![Activity classification](https://raw.githubusercontent.com/OxWearables/biobankAccelerometerAnalysis/master/docs/source/accClassification.png)

See [Methods](https://biobankaccanalysis.readthedocs.io/en/latest/methods.html) for more details.


## Citing our work
When using this tool, please consider the works listed in [CITATION.md](CITATION.md).
When using this tool, please consider the works listed in [CITATION.md](https://raw.githubusercontent.com/OxWearables/biobankAccelerometerAnalysis/master/CITATION.md).

## Licence
See [LICENSE.md](LICENSE.md).
See [LICENSE.md](https://raw.githubusercontent.com/OxWearables/biobankAccelerometerAnalysis/master/LICENSE.md).


## Acknowledgements
Expand Down
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