Skip to content

Commit

Permalink
add alt text to vignettes
Browse files Browse the repository at this point in the history
  • Loading branch information
wibeasley committed Oct 25, 2024
1 parent 1bdc662 commit e3a1364
Show file tree
Hide file tree
Showing 3 changed files with 13 additions and 8 deletions.
4 changes: 4 additions & 0 deletions vignettes/TroubleshootingApiCalls.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -44,6 +44,7 @@ This first group of checks primarily focuses on the server and the logins accoun

```{r EmailVerified}
#| echo = FALSE,
#| fig.alt = 'verified email screen shot',
#| out.extra = 'style = "fig.width=400px"'
knitr::include_graphics("images/EmailVerified.png")
```
Expand All @@ -54,6 +55,7 @@ This first group of checks primarily focuses on the server and the logins accoun
```{r ApiPrivilegeDashboard}
#| echo = FALSE,
#| fig.alt = 'tokens screen shot',
#| out.extra = 'style = "fig.width=600px"'
knitr::include_graphics("images/ApiPrivilegeDashboard.png")
```
Expand All @@ -64,6 +66,7 @@ This first group of checks primarily focuses on the server and the logins accoun
```{r MagnifyingGlass}
#| echo = FALSE,
#| fig.alt = 'magnifying screen shot',
#| out.extra = 'style = "fig.width=550px"'
knitr::include_graphics("images/MagnifyingGlass.png")
```
Expand All @@ -79,6 +82,7 @@ This section examines potential problems that occur after data leaves a working
```{r PostmanScreenshot}
#| echo = FALSE,
#| fig.alt = 'PostMan screen shot',
#| out.extra = 'style = "fig.width=800px"'
knitr::include_graphics("images/PostmanScreenshot.png")
```
Expand Down
2 changes: 1 addition & 1 deletion vignettes/workflow-read.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -202,7 +202,7 @@ ds_1 <-

At this point, the data.frame `ds_1` has everything you need to start analyzing the project.

```{r unstructured-2}
```{r unstructured-2, fig.alt = "histogram of patient weight"}
ds_1
hist(ds_1$weight)
Expand Down
15 changes: 8 additions & 7 deletions vignettes/workflow-write.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,8 @@ vignette: >
%\VignetteIndexEntry{Writing to a REDCap Project}
%\VignetteEncoding{UTF-8}
%\VignetteEngine{knitr::rmarkdown}
editor_options:
markdown:
editor_options:
markdown:
wrap: 72
---

Expand Down Expand Up @@ -241,6 +241,7 @@ ds_patient <-

```{r codebook-race}
#| echo = FALSE,
#| fig.alt = 'codebook race variable screen shot',
#| out.extra = 'style = "fig.width=1200px"'
knitr::include_graphics("images/codebook-race.png")
```
Expand Down Expand Up @@ -364,16 +365,16 @@ format (*i.e.*, everything jammed into one rectangle.)

## REDCap's CDIS

The [Clinical Data Interoperability Services](https://projectredcap.org/software/cdis/) (CDIS)
The [Clinical Data Interoperability Services](https://projectredcap.org/software/cdis/) (CDIS)
use [FHIR](https://www.hl7.org/fhir/overview.html) to move data from
your institution's [EMR/EHR](https://www.healthit.gov/faq/what-are-differences-between-electronic-medical-records-electronic-health-records-and-personal)
(eg, Epic, Cerner) to REDCap.
(eg, Epic, Cerner) to REDCap.
Research staff have control over which patient records are selected or eligible.
Conceptually it's similar to writing to REDCap's with the API,
Conceptually it's similar to writing to REDCap's with the API,
but at much bigger scale.
Realistically, it takes months to get through your institution's human layers.
Once established, a project would be populated with EMR data
in much less development time
Once established, a project would be populated with EMR data
in much less development time
--assuming the desired data models corresponds with
FHIR [endpoints](https://hl7.org/fhir/endpoint.html).

Expand Down

0 comments on commit e3a1364

Please sign in to comment.