Consolidate install deps

OpenSourceBrain · Feb 3, 2025 · 7099027 · 7099027
1 parent eda86a7
commit 7099027
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Showing 3 changed files with 7 additions and 7 deletions.
diff --git a/.github/workflows/non-omv.yml b/.github/workflows/non-omv.yml
@@ -26,19 +26,19 @@ jobs:
         run: |
           pip install git+https://github.com/OpenSourceBrain/osb-model-validation
 
-      - name: Run tests
+      - name: Install dependencies
         run: |
-          omv install jneuroml
+          pip install .
+
 
       - name: Test tellurium
         run: |
-          pip install tellurium
           sudo apt-get install libncurses6 --fix-missing
           cd tellurium
           python simple.py -nogui
 
           cd ../SBML/tests
-          pip install python-libsedml
+          
           python ./test_tellurium.py
 
       - name: Test validity of files

diff --git a/pyproject.toml b/pyproject.toml
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "SBMLShowcase"
-dynamic = ["version"]
+version = "0.1"
 requires-python = ">=3.9"
 dependencies = [
   "pyNeuroML[annotations]",

diff --git a/regenerate.sh b/regenerate.sh
@@ -29,8 +29,8 @@ mv BIOMD0000000184_LEMS_nrn.py Lavrentovich2008_Ca_Oscillations_0.mod ../NEURON
 
 ## Test converting a NeuroML+LEMS model to SBML+SED-ML
 cd ../NeuroML2
-jnml LEMS_NML2_Ex9_FN.xml -sbml-sedml
-jnml LEMS_Regular_HindmarshRose.xml -sbml-sedml
+pynml LEMS_NML2_Ex9_FN.xml -sbml-sedml
+pynml LEMS_Regular_HindmarshRose.xml -sbml-sedml
 mv *sedml ../SBML
 mv *sbml ../SBML