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Resources
ANUJA NEGI edited this page Sep 9, 2022
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This page points to resources/publications from the Allen Institute to understand the cell type database, models, and other ongoing research! See the official overview here.
- Technical white paper: methods for the Cell Types database
- Classification of electrophysiological and morphological neuron types in the mouse visual cortex, Gouwens et al., Jul 2019.
- Shared and distinct transcriptomic cell types across neocortical areas, Tasic et al., Oct 2018: based on genes
- Technical white paper: methods for tissue processing, electrophysiology data acquisition, and analysis of intrinsic properties
- Technical white paper: methods for histological staining, image acquisition, 3D reconstruction and structure-based categorization
- Systematic generation of biophysically detailed models for diverse cortical neuron types, Gouwens et al., Feb 2018.
- Systematic Integration of Structural and Functional Data into Multi-scale Models of Mouse Primary Visual Cortex, Bileh et al., Mar 2020.
Biophysically realistic, single-neuron models with passive dendrites and active soma.
Biophysically realistic, single-neuron models with active conductances everywhere.
Generalized leaky integrate-and-fire single-neuron models.
- Technical white paper
- Generalized leaky integrate-and-fire models classify multiple neuron types, Teeter et al., Feb 2018.
More recent, analysis and network papers.
- Jia, Xiaoxuan, et al. "Multi-regional module-based signal transmission in mouse visual cortex." Neuron 110.9 (2022): 1585-1598.
- Nandi, Anirban, et al. "Single-neuron models linking electrophysiology, morphology, and transcriptomics across cortical cell types."Cell Reports 40.6 (2022): 111176.
- Arkhipov, Anton, et al. "Visual physiology of the layer 4 cortical circuit in silico." PLoS computational biology 14.11 (2018): e1006535.