Skip to content

Commit

Permalink
Update version numbers
Browse files Browse the repository at this point in the history
  • Loading branch information
jpfeuffer authored Sep 30, 2020
1 parent 10db0b6 commit c7469bb
Showing 1 changed file with 12 additions and 12 deletions.
24 changes: 12 additions & 12 deletions Handout/gettingstarted.tex
Original file line number Diff line number Diff line change
Expand Up @@ -3,17 +3,17 @@

% File names are changed quite often between tutorial so make them configurable at the top.
% Please escape whitespaces except before and after / as a path separator.
\newcommand{\WindowsKnimeInstallerName}{Windows / KNIME\ 4.1.1\ Installer\ (64bit).exe}
\newcommand{\WindowsOpenMSInstallerName}{Windows / OpenMS-2.5.0-Win64.exe}
\newcommand{\WindowsOpenMSPrereqInstallerName}{Windows / OpenMS-2.5-prerequisites-installer.exe}
\newcommand{\WindowsPrerequisitesLink}{https://abibuilder.informatik.uni-tuebingen.de/archive/openms/OpenMSInstaller/PrerequisitesInstaller/OpenMS-2.5-prerequisites-installer.exe}
\newcommand{\WindowsDefaultPWizFolder}{C: / Program\ Files / OpenMS-2.5.0 / share / OpenMS / THIRDPARTY / pwiz-bin}
\newcommand{\MacKnimeInstallerName}{Mac / knime\_4.1.0.app.macosx.cocoa.x86\_64.dmg}
\newcommand{\MacOpenMSInstallerName}{Mac / OpenMS-2.5.0-macOS.dmg}
\newcommand{\KnimeUpdateSite}{http://update.knime.com/analytics-platform/4.1}
\newcommand{\KnimeTrustedSite}{http://update.knime.com/community-contributions/trusted/4.1}
\newcommand{\WindowsKnimeInstallerName}{Windows / KNIME\ 4.2.0\ Installer\ (64bit).exe}
\newcommand{\WindowsOpenMSInstallerName}{Windows / OpenMS-2.6.0-Win64.exe}
\newcommand{\WindowsOpenMSPrereqInstallerName}{Windows / OpenMS-2.6-prerequisites-installer.exe}
\newcommand{\WindowsPrerequisitesLink}{https://abibuilder.informatik.uni-tuebingen.de/archive/openms/OpenMSInstaller/PrerequisitesInstaller/OpenMS-2.6-prerequisites-installer.exe}
\newcommand{\WindowsDefaultPWizFolder}{C: / Program\ Files / OpenMS-2.6.0 / share / OpenMS / THIRDPARTY / pwiz-bin}
\newcommand{\MacKnimeInstallerName}{Mac / knime\_4.2.0.app.macosx.cocoa.x86\_64.dmg}
\newcommand{\MacOpenMSInstallerName}{Mac / OpenMS-2.6.0-macOS.dmg}
\newcommand{\KnimeUpdateSite}{http://update.knime.com/analytics-platform/4.2}
\newcommand{\KnimeTrustedSite}{http://update.knime.com/community-contributions/trusted/4.2}
\newcommand{\KnimeTrunkSite}{https://abibuilder.informatik.uni-tuebingen.de/archive/openms/knime-plugin/updateSite/nightly/}
\newcommand{\KnimeUSBUpdateSite}{file:/KNIMEUpdateSite/2.5.0/}
\newcommand{\KnimeUSBUpdateSite}{file:/KNIMEUpdateSite/2.6.0/}

\setcounter{equation}{0}

Expand Down Expand Up @@ -42,9 +42,9 @@ \subsubsection{Installation from the OpenMS USB stick}

and follow the instructions. For the OpenMS installation on \textbf{macOS}, you need to accept the license drag and drop the OpenMS folder into your Applications folder.
\note{Due to increasing security measures for downloaded apps (e.g. path randomization) on \textbf{macOS} you might need to open TOPPView.app and TOPPAS.app while holding \keys{\ctrl} and accept the warning.
If the app still does not open, you might need to move them from \directory{Applications / OpenMS-2.5.0} to e.g. your Desktop and back.}
If the app still does not open, you might need to move them from \directory{Applications / OpenMS-2.6.0} to e.g. your Desktop and back.}
On \textbf{Linux} you can extract KNIME to a folder of your choice and for TOPPView you need to install OpenMS via your package manager or build it on your own with the instructions under \href{https://www.openms.de/documentation}{www.openms.de/documentation}.
\note{If you have installed OpenMS on Linux or macOS via your package manager (for instance by installing the \texttt{OpenMS-2.5.0-Linux.deb} package), then you need to set the \texttt{OPENMS\_DATA\_PATH} variable to the directory containing the shared data (normally \texttt{/usr/share/OpenMS}). This must be done prior to running any TOPP tool.}
\note{If you have installed OpenMS on Linux or macOS via your package manager (for instance by installing the \texttt{OpenMS-2.6.0-Linux.deb} package), then you need to set the \texttt{OPENMS\_DATA\_PATH} variable to the directory containing the shared data (normally \texttt{/usr/share/OpenMS}). This must be done prior to running any TOPP tool.}

\subsubsection{Installation from the internet}
If you are working through this tutorial at home you can get the installers under the following links:
Expand Down

0 comments on commit c7469bb

Please sign in to comment.