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Merge pull request #36 from FabianAicheler/patch-1
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consensus workflow tutorial setting. specificity fix
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timosachsenberg committed Jun 7, 2016
2 parents 75ffd2d + a0ba765 commit 709cd5f
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2 changes: 1 addition & 1 deletion Handout/labelfree.tex
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Expand Up @@ -91,7 +91,7 @@ \subsubsection{Bonus task: identification using several search engines}
\item
Now we can create a consensus identification with the \KNIMENODE{ConsensusID} \menu{Community Nodes > OpenMS > ID Processing} node.
We can connect this to the \KNIMENODE{PeptideIndexer} and go along with our existing FDR filtering.
\note{By default, X!Tandem takes additional enzyme cutting rules into consideration (besides the specified tryptic digest). Thus you have to set PeptideIndexer's \textit{enzyme $\rightarrow$ specificity} parameter to \texttt{semi} to accept X!Tandems semi tryptic identifications as well.}
\note{By default, X!Tandem takes additional enzyme cutting rules into consideration (besides the specified tryptic digest). Thus for the tutorial files, you have to set PeptideIndexer's \textit{enzyme $\rightarrow$ specificity} parameter to \texttt{none} to accept X!Tandems non-tryptic identifications as well.}
\end{itemize}

\begin{figure}[htbp]
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