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Update Aciclovir-Mean-SVG (#53)
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Co-authored-by: GitHub Actions <[email protected]>
@github-actions @actions-user
github-actions[bot] and actions-user authored Sep 9, 2024
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Showing 5 changed files with 67 additions and 67 deletions.
28 changes: 14 additions & 14 deletions Reports/Aciclovir-Mean-SVG/Report.md
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# Table of Contents

* [1 Sensitivity Analysis ](#sensitivity-analysis)
* [1.1 Sensitivity Analysis for Aciclovir ](#sensitivity-analysis-aciclovir)
* [2 PK parameters ](#pk-parameters)
* [2.1 PK parameters for Aciclovir ](#pk-parameters-aciclovir)
* [3 Time profiles and residual plots ](#time-profiles)
* [3.1 Time profiles and residual plots for Aciclovir ](#time-profiles-aciclovir)
* [1 Sensitivity Analysis](#sensitivity-analysis)
* [1.1 Sensitivity Analysis for Aciclovir](#sensitivity-analysis-aciclovir)
* [2 PK parameters](#pk-parameters)
* [2.1 PK parameters for Aciclovir](#pk-parameters-aciclovir)
* [3 Time profiles and residual plots](#time-profiles)
* [3.1 Time profiles and residual plots for Aciclovir](#time-profiles-aciclovir)





# 1 Sensitivity Analysis <a id="sensitivity-analysis"></a>
# 1 Sensitivity Analysis<a id="sensitivity-analysis"></a>


## 1.1 Sensitivity Analysis for Aciclovir <a id="sensitivity-analysis-aciclovir"></a>
## 1.1 Sensitivity Analysis for Aciclovir<a id="sensitivity-analysis-aciclovir"></a>


<a id="figure-1-1"></a>
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# 2 PK parameters <a id="pk-parameters"></a>
# 2 PK parameters<a id="pk-parameters"></a>


## 2.1 PK parameters for Aciclovir <a id="pk-parameters-aciclovir"></a>
## 2.1 PK parameters for Aciclovir<a id="pk-parameters-aciclovir"></a>


<a id="table-2-1"></a>
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# 3 Time profiles and residual plots <a id="time-profiles"></a>
# 3 Time profiles and residual plots<a id="time-profiles"></a>


## 3.1 Time profiles and residual plots for Aciclovir <a id="time-profiles-aciclovir"></a>
## 3.1 Time profiles and residual plots for Aciclovir<a id="time-profiles-aciclovir"></a>


<a id="figure-3-1"></a>

![](TimeProfiles/Aciclovir-3_timeProfile_Concentration_total.svg)
![](TimeProfiles/Aciclovir-3_timeProfile_1_total.svg)



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<a id="figure-3-2"></a>

![](TimeProfiles/Aciclovir-4_timeProfileLog_Concentration_total.svg)
![](TimeProfiles/Aciclovir-4_timeProfileLog_2_total.svg)



0 ...vir-3_timeProfile_Concentration_total.svg → ...files/Aciclovir-3_timeProfile_1_total.svg
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0 ...-4_timeProfileLog_Concentration_total.svg → ...es/Aciclovir-4_timeProfileLog_2_total.svg
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50 changes: 25 additions & 25 deletions Reports/Aciclovir-Mean-SVG/log-debug.txt
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19/08/2024 - 01:06:46
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Simulation file 'Simulation file 'Models/Aciclovir.pkml' successfully loaded' successfully loaded
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Simulation results 'tests/Reports/Aciclovir-Mean-SVG/SimulationResults/Aciclovir-SimulationResults.csv' successfully loaded
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Calculation of PK parameters complete
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PK parameters for 'Aciclovir' saved in 'tests/Reports/Aciclovir-Mean-SVG/PKAnalysisResults/Aciclovir-PKAnalysisResults.csv
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Figure 'tests/Reports/Aciclovir-Mean-SVG/Sensitivity/Aciclovir-1_sensitivity_AUC_tEnd.svg' was successfully saved.
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Figure 'tests/Reports/Aciclovir-Mean-SVG/Sensitivity/Aciclovir-2_sensitivity_CL.svg' was successfully saved.
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Figure 'tests/Reports/Aciclovir-Mean-SVG/Sensitivity/Aciclovir-3_sensitivity_Vss.svg' was successfully saved.
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Figure 'tests/Reports/Aciclovir-Mean-SVG/Sensitivity/Aciclovir-4_sensitivity_C_max.svg' was successfully saved.
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Table 'tests/Reports/Aciclovir-Mean-SVG/PKAnalysis/Aciclovir-pk_parameters_Aciclovir.csv' was successfully saved.
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'1' applications identified for path 'Organism|PeripheralVenousBlood|Aciclovir|Plasma (Peripheral Venous Blood)' in simulation 'Vergin 1995 IV'
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Time ranges for 'Vergin 1995 IV' timeRanges
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491 simulated data were included in the analysis between 0 and 24 h.
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0 observed data were included in the analysis between 0 and 24 h.
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1 values from variable 'Concentration' were negative and removed from the analysis
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Table 'tests/Reports/Aciclovir-Mean-SVG/TimeProfiles/Aciclovir-1_time_profile_data.csv' was successfully saved.
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Figure 'tests/Reports/Aciclovir-Mean-SVG/TimeProfiles/Aciclovir-3_timeProfile_Concentration_total.svg' was successfully saved.
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Figure 'tests/Reports/Aciclovir-Mean-SVG/TimeProfiles/Aciclovir-4_timeProfileLog_Concentration_total.svg' was successfully saved.
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Figure 'tests/Reports/Aciclovir-Mean-SVG/TimeProfiles/Aciclovir-3_timeProfile_1_total.svg' was successfully saved.
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Figure 'tests/Reports/Aciclovir-Mean-SVG/TimeProfiles/Aciclovir-4_timeProfileLog_2_total.svg' was successfully saved.
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Reports 'tests/Reports/Aciclovir-Mean-SVG/appendix-sensitivity-analysis.md', 'tests/Reports/Aciclovir-Mean-SVG/appendix-pk-parameters.md', 'tests/Reports/Aciclovir-Mean-SVG/appendix-time-profile.md' were successfully merged into 'tests/Reports/Aciclovir-Mean-SVG/Report.md'
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In 'tests/Reports/Aciclovir-Mean-SVG/Report.md', 0.666666666666667 tables and 6 figures were referenced.
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In 'tests/Reports/Aciclovir-Mean-SVG/Report.md', 5 sections were numbered
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In 'tests/Reports/Aciclovir-Mean-SVG/Report.md', table of content of 6 lines was included.
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'tests/Reports/Aciclovir-Mean-SVG/Report.md' already exists. Overwriting 'tests/Reports/Aciclovir-Mean-SVG/Report.md'.
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Reports 'temp-report-title.md', 'tests/Reports/Aciclovir-Mean-SVG/Report.md' were successfully merged into 'tests/Reports/Aciclovir-Mean-SVG/Report.md'
56 changes: 28 additions & 28 deletions Reports/Aciclovir-Mean-SVG/log-info.txt
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Reporting Engine Information:
Date: 19/08/2024 - 01:06:45
Date: 09/09/2024 - 13:15:14
User Information:
Computer Name: fv-az731-375
Computer Name: fv-az653-678
User: runneradmin
Login: runneradmin
System is NOT validated
System versions:
R version: R version 4.4.1 (2024-06-14 ucrt)
OSP Suite Package version: 12.1.0
OSP Reporting Engine version: 2.2.360
OSP Reporting Engine version: 2.2.367
tlf version: 1.5.170
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Starting run of Mean Model Workflow
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Starting run of Simulation task
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Splitting simulations for parallel run: 1 simulations split into 1 subsets
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Starting run of subset simulations
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Simulation task completed in 0 min
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Starting run of Calculate PK Parameters task
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Starting run of Calculate PK Parameters task for Aciclovir
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Calculate PK Parameters task completed in 0 min
19/08/2024 - 01:06:48
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Starting run of Sensitivity Analysis task
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Starting run of Sensitivity Analysis task for Aciclovir
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Starting run of Sensitivity Analysis for path(s) 'Organism|Protein ratio (interstial/plasma)', 'Organism|Vf (lipid, blood cells)', 'Organism|Vf (protein,blood cells)', 'Organism|Vf (water,blood cells)', 'Organism|Vf (water,interstitial)', 'Organism|Vf (water,plasma)', 'Organism|Ontogeny factor (albumin)', 'Organism|Ontogeny factor (alpha1-acid glycoprotein)', 'Organism|Plasma protein scale factor', 'Organism|Hematocrit', 'Organism|VenousBlood|Volume', 'Organism|ArterialBlood|Volume', 'Organism|Bone|Vf (lipid)', 'Organism|Bone|Vf (protein)', 'Organism|Bone|Vf (water)', 'Organism|Bone|Specific blood flow rate', 'Organism|Bone|Volume', 'Organism|Gallbladder|Gallbladder ejection half-time', 'Organism|Gallbladder|Gallbladder ejection fraction', 'Organism|Brain|Vf (lipid)', 'Organism|Brain|Vf (protein)', 'Organism|Brain|Vf (water)', 'Organism|Brain|Volume', 'Organism|Brain|Specific blood flow rate', 'Organism|Fat|Vf (protein)', 'Organism|Fat|Volume', 'Organism|Fat|Vf (lipid)', 'Organism|Fat|Vf (water)', 'Organism|Fat|Specific blood flow rate', 'Organism|Gonads|Vf (lipid)', 'Organism|Gonads|Vf (protein)', 'Organism|Gonads|Vf (water)', 'Organism|Gonads|Volume', 'Organism|Gonads|Specific blood flow rate', 'Organism|Heart|Vf (lipid)', 'Organism|Heart|Vf (protein)', 'Organism|Heart|Vf (water)', 'Organism|Heart|Volume', 'Organism|Heart|Specific blood flow rate', 'Organism|Kidney|Vf (lipid)', 'Organism|Kidney|Vf (protein)', 'Organism|Kidney|Vf (water)', 'Organism|Kidney|Volume', 'Organism|Kidney|Specific blood flow rate', 'Organism|Lumen|Effective surface area variability factor', 'Organism|Lumen|Stomach|Fractional steady state fill level', 'Organism|Lumen|Stomach|pH in fasted state', 'Organism|Lumen|Stomach|Distal radius', 'Organism|Lumen|Stomach|Gastric emptying time', 'Organism|Lumen|Stomach|Length', 'Organism|Lumen|Stomach|Proximal radius', 'Organism|Lumen|Duodenum|Fractional steady state fill level', 'Organism|Lumen|Duodenum|pH', 'Organism|Lumen|Duodenum|Effective surface area enhancement factor', 'Organism|Lumen|UpperJejunum|Fractional steady state fill level', 'Organism|Lumen|UpperJejunum|pH', 'Organism|Lumen|UpperJejunum|Effective surface area enhancement factor', 'Organism|Lumen|LowerJejunum|Fractional steady state fill level', 'Organism|Lumen|LowerJejunum|pH', 'Organism|Lumen|LowerJejunum|Effective surface area enhancement factor', 'Organism|Lumen|UpperIleum|Fractional steady state fill level', 'Organism|Lumen|UpperIleum|pH', 'Organism|Lumen|UpperIleum|Effective surface area enhancement factor', 'Organism|Lumen|LowerIleum|Fractional steady state fill level', 'Organism|Lumen|LowerIleum|pH', 'Organism|Lumen|LowerIleum|Effective surface area enhancement factor', 'Organism|Lumen|Caecum|Fractional steady state fill level', 'Organism|Lumen|Caecum|pH', 'Organism|Lumen|Caecum|Effective surface area enhancement factor', 'Organism|Lumen|ColonAscendens|Fractional steady state fill level', 'Organism|Lumen|ColonAscendens|pH', 'Organism|Lumen|ColonAscendens|Effective surface area enhancement factor', 'Organism|Lumen|ColonTransversum|Fractional steady state fill level', 'Organism|Lumen|ColonTransversum|pH', 'Organism|Lumen|ColonTransversum|Effective surface area enhancement factor', 'Organism|Lumen|ColonDescendens|Fractional steady state fill level', 'Organism|Lumen|ColonDescendens|pH', 'Organism|Lumen|ColonDescendens|Effective surface area enhancement factor', 'Organism|Lumen|ColonSigmoid|Fractional steady state fill level', 'Organism|Lumen|ColonSigmoid|pH', 'Organism|Lumen|ColonSigmoid|Effective surface area enhancement factor', 'Organism|Lumen|Rectum|Fractional steady state fill level', 'Organism|Lumen|Rectum|pH', 'Organism|Lumen|Rectum|Effective surface area enhancement factor', 'Organism|Stomach|Vf (lipid)', 'Organism|Stomach|Vf (protein)', 'Organism|Stomach|Vf (water)', 'Organism|Stomach|Volume', 'Organism|Stomach|Specific blood flow rate', 'Organism|SmallIntestine|Vf (lipid)', 'Organism|SmallIntestine|Vf (protein)', 'Organism|SmallIntestine|Vf (water)', 'Organism|SmallIntestine|Small intestinal transit time', 'Organism|SmallIntestine|Volume', 'Organism|SmallIntestine|Specific blood flow rate', 'Organism|SmallIntestine|Mucosa|Duodenum|Fraction mucosa', 'Organism|SmallIntestine|Mucosa|Duodenum|Vf (lipid)', 'Organism|SmallIntestine|Mucosa|Duodenum|Vf (protein)', 'Organism|SmallIntestine|Mucosa|Duodenum|Vf (water)', 'Organism|SmallIntestine|Mucosa|Duodenum|Intracellular|pH', 'Organism|SmallIntestine|Mucosa|UpperJejunum|Fraction mucosa', 'Organism|SmallIntestine|Mucosa|UpperJejunum|Vf (lipid)', 'Organism|SmallIntestine|Mucosa|UpperJejunum|Vf (protein)', 'Organism|SmallIntestine|Mucosa|UpperJejunum|Vf (water)', 'Organism|SmallIntestine|Mucosa|UpperJejunum|Intracellular|pH', 'Organism|SmallIntestine|Mucosa|LowerJejunum|Fraction mucosa', 'Organism|SmallIntestine|Mucosa|LowerJejunum|Vf (lipid)', 'Organism|SmallIntestine|Mucosa|LowerJejunum|Vf (protein)', 'Organism|SmallIntestine|Mucosa|LowerJejunum|Vf (water)', 'Organism|SmallIntestine|Mucosa|LowerJejunum|Intracellular|pH', 'Organism|SmallIntestine|Mucosa|UpperIleum|Fraction mucosa', 'Organism|SmallIntestine|Mucosa|UpperIleum|Vf (lipid)', 'Organism|SmallIntestine|Mucosa|UpperIleum|Vf (protein)', 'Organism|SmallIntestine|Mucosa|UpperIleum|Vf (water)', 'Organism|SmallIntestine|Mucosa|UpperIleum|Intracellular|pH', 'Organism|SmallIntestine|Mucosa|LowerIleum|Fraction mucosa', 'Organism|SmallIntestine|Mucosa|LowerIleum|Vf (lipid)', 'Organism|SmallIntestine|Mucosa|LowerIleum|Vf (protein)', 'Organism|SmallIntestine|Mucosa|LowerIleum|Vf (water)', 'Organism|SmallIntestine|Mucosa|LowerIleum|Intracellular|pH', 'Organism|LargeIntestine|Vf (lipid)', 'Organism|LargeIntestine|Vf (protein)', 'Organism|LargeIntestine|Vf (water)', 'Organism|LargeIntestine|Large intestinal transit time', 'Organism|LargeIntestine|Volume', 'Organism|LargeIntestine|Specific blood flow rate', 'Organism|LargeIntestine|Mucosa|Caecum|Fraction mucosa', 'Organism|LargeIntestine|Mucosa|Caecum|Vf (lipid)', 'Organism|LargeIntestine|Mucosa|Caecum|Vf (protein)', 'Organism|LargeIntestine|Mucosa|Caecum|Vf (water)', 'Organism|LargeIntestine|Mucosa|Caecum|Intracellular|pH', 'Organism|LargeIntestine|Mucosa|ColonAscendens|Fraction mucosa', 'Organism|LargeIntestine|Mucosa|ColonAscendens|Vf (lipid)', 'Organism|LargeIntestine|Mucosa|ColonAscendens|Vf (protein)', 'Organism|LargeIntestine|Mucosa|ColonAscendens|Vf (water)', 'Organism|LargeIntestine|Mucosa|ColonAscendens|Intracellular|pH', 'Organism|LargeIntestine|Mucosa|ColonTransversum|Fraction mucosa', 'Organism|LargeIntestine|Mucosa|ColonTransversum|Vf (lipid)', 'Organism|LargeIntestine|Mucosa|ColonTransversum|Vf (protein)', 'Organism|LargeIntestine|Mucosa|ColonTransversum|Vf (water)', 'Organism|LargeIntestine|Mucosa|ColonTransversum|Intracellular|pH', 'Organism|LargeIntestine|Mucosa|ColonDescendens|Fraction mucosa', 'Organism|LargeIntestine|Mucosa|ColonDescendens|Vf (lipid)', 'Organism|LargeIntestine|Mucosa|ColonDescendens|Vf (protein)', 'Organism|LargeIntestine|Mucosa|ColonDescendens|Vf (water)', 'Organism|LargeIntestine|Mucosa|ColonDescendens|Intracellular|pH', 'Organism|LargeIntestine|Mucosa|ColonSigmoid|Fraction mucosa', 'Organism|LargeIntestine|Mucosa|ColonSigmoid|Vf (lipid)', 'Organism|LargeIntestine|Mucosa|ColonSigmoid|Vf (protein)', 'Organism|LargeIntestine|Mucosa|ColonSigmoid|Vf (water)', 'Organism|LargeIntestine|Mucosa|ColonSigmoid|Intracellular|pH', 'Organism|LargeIntestine|Mucosa|Rectum|Fraction mucosa', 'Organism|LargeIntestine|Mucosa|Rectum|Vf (lipid)', 'Organism|LargeIntestine|Mucosa|Rectum|Vf (protein)', 'Organism|LargeIntestine|Mucosa|Rectum|Vf (water)', 'Organism|LargeIntestine|Mucosa|Rectum|Intracellular|pH', 'Organism|Liver|Fraction of periportal zone', 'Organism|Liver|Vf (lipid)', 'Organism|Liver|Vf (protein)', 'Organism|Liver|Vf (water)', 'Organism|Liver|Volume', 'Organism|Liver|Specific blood flow rate', 'Organism|Lung|Vf (lipid)', 'Organism|Lung|Vf (protein)', 'Organism|Lung|Vf (water)', 'Organism|Lung|Volume', 'Organism|Muscle|Peripheral blood flow fraction', 'Organism|Muscle|Volume', 'Organism|Muscle|Vf (lipid)', 'Organism|Muscle|Vf (protein)', 'Organism|Muscle|Vf (water)', 'Organism|Muscle|Specific blood flow rate', 'Organism|Pancreas|Vf (lipid)', 'Organism|Pancreas|Vf (protein)', 'Organism|Pancreas|Vf (water)', 'Organism|Pancreas|Volume', 'Organism|Pancreas|Specific blood flow rate', 'Organism|PortalVein|Volume', 'Organism|Skin|Peripheral blood flow fraction', 'Organism|Skin|Vf (lipid)', 'Organism|Skin|Vf (protein)', 'Organism|Skin|Vf (water)', 'Organism|Skin|Volume', 'Organism|Skin|Specific blood flow rate', 'Organism|Spleen|Vf (lipid)', 'Organism|Spleen|Vf (protein)', 'Organism|Spleen|Vf (water)', 'Organism|Spleen|Volume', 'Organism|Spleen|Specific blood flow rate', 'Organism|Saliva|Saliva flow rate', 'Neighborhoods|Bone_pls_Bone_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|Fat_pls_Fat_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|Gonads_pls_Gonads_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|Heart_pls_Heart_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|Kidney_pls_Kidney_ur|Aciclovir|Renal Clearances-TS|Volume (kidney)', 'Neighborhoods|Kidney_pls_Kidney_ur|Aciclovir|Renal Clearances-TS|Tubular secretion', 'Neighborhoods|Kidney_pls_Kidney_ur|Aciclovir|Glomerular Filtration-GFR|GFR fraction', 'Neighborhoods|Kidney_pls_Kidney_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|Stomach_pls_Stomach_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|SmallIntestine_pls_SmallIntestine_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|LargeIntestine_pls_LargeIntestine_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|Periportal_pls_Periportal_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|Pericentral_pls_Pericentral_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|Lung_pls_Lung_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|Muscle_pls_Muscle_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|Pancreas_pls_Pancreas_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|Skin_pls_Skin_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|Spleen_pls_Spleen_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|Duodenum_pls_Duodenum_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|UpperJejunum_pls_UpperJejunum_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|LowerJejunum_pls_LowerJejunum_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|UpperIleum_pls_UpperIleum_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|LowerIleum_pls_LowerIleum_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|Caecum_pls_Caecum_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|ColonAscendens_pls_ColonAscendens_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|ColonTransversum_pls_ColonTransversum_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|ColonDescendens_pls_ColonDescendens_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|ColonSigmoid_pls_ColonSigmoid_int|Aciclovir|P (plasma<->interstitial)', 'Neighborhoods|Rectum_pls_Rectum_int|Aciclovir|P (plasma<->interstitial)', 'Aciclovir|pKa value 0', 'Aciclovir|pKa value 1', 'Aciclovir|Lipophilicity', 'Aciclovir|Fraction unbound (plasma, reference value)', 'Aciclovir|Solubility at reference pH', 'Aciclovir|Reference pH', 'Aciclovir|Solubility gain per charge', 'Applications|IV 250mg 10min|Application_1|ProtocolSchemaItem|Dose', 'Applications|IV 250mg 10min|Application_1|ProtocolSchemaItem|Infusion time'
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Sensitivity Analysis completed in 0.4 min
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Sensitivity Analysis task completed in 0.5 min
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Starting run of Plot Sensitivity task
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Starting run of Plot Sensitivity task for Aciclovir
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Plot Sensitivity task completed in 0.1 min
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Starting run of Plot PK Parameters task
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Starting run of Plot PK Parameters task for Aciclovir
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Plot PK Parameters task completed in 0 min
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Starting run of Plot Time profiles and Residuals task
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Starting run of Plot Time profiles and Residuals task for Aciclovir
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Plot Time profiles and Residuals task completed in 0.1 min
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Mean Model Workflow completed in 0.6 min
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Mean Model Workflow completed in 0.7 min

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