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Added/modified test reports and updated README
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20 changes: 10 additions & 10 deletions README.md
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| Reference | Test Report | Script | Run Time |
|:----------------------------------------------------------------------------------------------------------------------------------------------------|:---------------------------------------------------------------------------------------------------------------------------------|:-------------------------------------------------------------------------------|:---------|
| [Aciclovir-Mean](./Reports/Aciclovir-Mean) | [Aciclovir-Mean](./tests/Reports/Aciclovir-Mean/Report.md) | [report-aciclovir-mean.R](./R/report-aciclovir-mean.R) | 0.6 min |
| [Aciclovir-Mean-SVG](./Reports/Aciclovir-Mean-SVG) | [Aciclovir-Mean-SVG](./tests/Reports/Aciclovir-Mean-SVG/Report.md) | [report-aciclovir-mean-svg.R](./R/report-aciclovir-mean-svg.R) | 0.8 min |
| [Aciclovir-Population](./Reports/Aciclovir-Population) | [Aciclovir-Population](./tests/Reports/Aciclovir-Population/Report.md) | [report-aciclovir-population.R](./R/report-aciclovir-population.R) | 7.8 min |
| [Raltegravir-Absorption](./Reports/Raltegravir-Absorption) | [Raltegravir-Absorption](./tests/Reports/Raltegravir-Absorption/Report.md) | [report-raltegravir-absorption.R](./R/report-raltegravir-absorption.R) | 1 min |
| [Aciclovir-Mean-SVG](./Reports/Aciclovir-Mean-SVG) | [Aciclovir-Mean-SVG](./tests/Reports/Aciclovir-Mean-SVG/Report.md) | [report-aciclovir-mean-svg.R](./R/report-aciclovir-mean-svg.R) | 0.7 min |
| [Aciclovir-Population](./Reports/Aciclovir-Population) | [Aciclovir-Population](./tests/Reports/Aciclovir-Population/Report.md) | [report-aciclovir-population.R](./R/report-aciclovir-population.R) | 8 min |
| [Raltegravir-Absorption](./Reports/Raltegravir-Absorption) | [Raltegravir-Absorption](./tests/Reports/Raltegravir-Absorption/Report.md) | [report-raltegravir-absorption.R](./R/report-raltegravir-absorption.R) | 0.9 min |
| [Raltegravir-Mass-Balance](./Reports/Raltegravir-Mass-Balance) | [Raltegravir-Mass-Balance](./tests/Reports/Raltegravir-Mass-Balance/Report.md) | [report-raltegravir-mass-<br>balance.R](./R/report-raltegravir-mass-balance.R) | 1.1 min |
| [Test-NO7](./Reports/Test-NO7) | [Test-NO7](./tests/Reports/Test-NO7/Report.md) | [report-NO7.R](./R/report-NO7.R) | 0.3 min |
| [Test-NO8](./Reports/Test-NO8) | [Test-NO8](./tests/Reports/Test-NO8/Report.md) | [report-NO8.R](./R/report-NO8.R) | 0.6 min |
| [Test-NO9](./Reports/Test-NO9) | [Test-NO9](./tests/Reports/Test-NO9/Report.md) | [report-NO9.R](./R/report-NO9.R) | 0.9 min |
| [Test-NO10](./Reports/Test-NO10) | [Test-NO10](./tests/Reports/Test-NO10/Report.md) | [report-NO10.R](./R/report-NO10.R) | 4.8 min |
| [Test-NO10](./Reports/Test-NO10) | [Test-NO10](./tests/Reports/Test-NO10/Report.md) | [report-NO10.R](./R/report-NO10.R) | 4.9 min |
| [Test-NO11](./Reports/Test-NO11) | [Test-NO11](./tests/Reports/Test-NO11/Report.md) | [report-NO11.R](./R/report-NO11.R) | 0.3 min |
| [Test-NO12](./Reports/Test-NO12) | [Test-NO12](./tests/Reports/Test-NO12/Report.md) | [report-NO12.R](./R/report-NO12.R) | 0.6 min |
| [Qualification-CKD](https://github.com/Open-Systems-Pharmacology/Qualification-CKD) | [Qualification-CKD](./tests/Reports/Qualification-CKD/Report.md) | [report-qualification-ckd.R](./R/report-qualification-ckd.R) | 5.9 min |
| [Qualification-HI](https://github.com/Open-Systems-Pharmacology/Qualification-HI) | [Qualification-HI](./tests/Reports/Qualification-HI/Report.md) | [report-qualification-hi.R](./R/report-qualification-hi.R) | 6 min |
| [Pediatric-Qualification-<br>Package-UGT1A1-Ontogeny](https://github.com/Open-Systems-Pharmacology/Pediatric_Qualification_Package_UGT1A1_Ontogeny) | [Pediatric-Qualification-<br>Package-UGT1A1-Ontogeny](./tests/Reports/Pediatric_Qualification_Package_UGT1A1_Ontogeny/Report.md) | [report-qualification-ugt.R](./R/report-qualification-ugt.R) | 1.6 min |
| [Digoxin-Model](https://github.com/Open-Systems-Pharmacology/Digoxin-Model) | [Digoxin-Model](./tests/Reports/Digoxin-Model/Report.md) | [report-qualification-digoxin.R](./R/report-qualification-digoxin.R) | 11.8 min |
| [Qualification-CKD](https://github.com/Open-Systems-Pharmacology/Qualification-CKD) | [Qualification-CKD](./tests/Reports/Qualification-CKD/Report.md) | [report-qualification-ckd.R](./R/report-qualification-ckd.R) | 6 min |
| [Qualification-HI](https://github.com/Open-Systems-Pharmacology/Qualification-HI) | [Qualification-HI](./tests/Reports/Qualification-HI/Report.md) | [report-qualification-hi.R](./R/report-qualification-hi.R) | 5.9 min |
| [Pediatric-Qualification-<br>Package-UGT1A1-Ontogeny](https://github.com/Open-Systems-Pharmacology/Pediatric_Qualification_Package_UGT1A1_Ontogeny) | [Pediatric-Qualification-<br>Package-UGT1A1-Ontogeny](./tests/Reports/Pediatric_Qualification_Package_UGT1A1_Ontogeny/Report.md) | [report-qualification-ugt.R](./R/report-qualification-ugt.R) | 1.5 min |
| [Digoxin-Model](https://github.com/Open-Systems-Pharmacology/Digoxin-Model) | [Digoxin-Model](./tests/Reports/Digoxin-Model/Report.md) | [report-qualification-digoxin.R](./R/report-qualification-digoxin.R) | 11.7 min |
| [Propofol-Model](https://github.com/Open-Systems-Pharmacology/Propofol-Model) | [Propofol-Model](./tests/Reports/Propofol-Model/Report.md) | [report-qualification-propofol.R](./R/report-qualification-propofol.R) | 2 min |
| [dAb2-Model](https://github.com/Open-Systems-Pharmacology/dAb2-Model) | [dAb2-Model](./tests/Reports/dAb2-Model/Report.md) | [report-qualification-dab2.R](./R/report-qualification-dab2.R) | 0.9 min |
| [dAb2-Model](https://github.com/Open-Systems-Pharmacology/dAb2-Model) | [dAb2-Model](./tests/Reports/dAb2-Model/Report.md) | [report-qualification-dab2.R](./R/report-qualification-dab2.R) | 0.8 min |
| [MEDI524YTE-Model](https://github.com/Open-Systems-Pharmacology/MEDI524YTE-Model) | [MEDI524YTE-Model](./tests/Reports/MEDI524YTE-Model/Report.md) | [report-qualification-<br>medi524yte.R](./R/report-qualification-medi524yte.R) | 0.7 min |
| [MEDI524-Model](https://github.com/Open-Systems-Pharmacology/MEDI524-Model) | [MEDI524-Model](./tests/Reports/MEDI524-Model/Report.md) | [report-qualification-medi524.R](./R/report-qualification-medi524.R) | 0.4 min |
| [TestInput01-DDI](https://github.com/Open-Systems-Pharmacology/TestInput01_DDI) | [TestInput01-DDI](./tests/Reports/TestInput01_DDI/Report.md) | [report-qualification-ddi.R](./R/report-qualification-ddi.R) | 4.2 min |
| [TestInput01-DDI](https://github.com/Open-Systems-Pharmacology/TestInput01_DDI) | [TestInput01-DDI](./tests/Reports/TestInput01_DDI/Report.md) | [report-qualification-ddi.R](./R/report-qualification-ddi.R) | 3.9 min |

## Detailed Test Results

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46 changes: 23 additions & 23 deletions tests/Reports/Aciclovir-Mean-SVG/log-debug.txt
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09/10/2024 - 11:38:43
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Simulation file 'Simulation file 'Models/Aciclovir.pkml' successfully loaded' successfully loaded
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Simulation results 'tests/Reports/Aciclovir-Mean-SVG/SimulationResults/Aciclovir-SimulationResults.csv' successfully loaded
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Calculation of PK parameters complete
09/10/2024 - 11:38:45
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PK parameters for 'Aciclovir' saved in 'tests/Reports/Aciclovir-Mean-SVG/PKAnalysisResults/Aciclovir-PKAnalysisResults.csv
09/10/2024 - 11:39:25
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Figure 'tests/Reports/Aciclovir-Mean-SVG/Sensitivity/Aciclovir-1_sensitivity_AUC_tEnd.svg' was successfully saved.
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Figure 'tests/Reports/Aciclovir-Mean-SVG/Sensitivity/Aciclovir-2_sensitivity_CL.svg' was successfully saved.
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Figure 'tests/Reports/Aciclovir-Mean-SVG/Sensitivity/Aciclovir-3_sensitivity_Vss.svg' was successfully saved.
09/10/2024 - 11:39:25
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Figure 'tests/Reports/Aciclovir-Mean-SVG/Sensitivity/Aciclovir-4_sensitivity_C_max.svg' was successfully saved.
09/10/2024 - 11:39:25
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Table 'tests/Reports/Aciclovir-Mean-SVG/PKAnalysis/Aciclovir-pk_parameters_Aciclovir.csv' was successfully saved.
09/10/2024 - 11:39:26
09/10/2024 - 13:38:55
'1' applications identified for path 'Organism|PeripheralVenousBlood|Aciclovir|Plasma (Peripheral Venous Blood)' in simulation 'Vergin 1995 IV'
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Time ranges for 'Vergin 1995 IV' timeRanges
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491 simulated data were included in the analysis between 0 and 24 h.
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0 observed data were included in the analysis between 0 and 24 h.
09/10/2024 - 11:39:27
09/10/2024 - 13:38:57
1 values from variable 'Concentration' were negative and removed from the analysis
09/10/2024 - 11:39:29
09/10/2024 - 13:38:58
Table 'tests/Reports/Aciclovir-Mean-SVG/TimeProfiles/Aciclovir-1_time_profile_data.csv' was successfully saved.
09/10/2024 - 11:39:29
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Figure 'tests/Reports/Aciclovir-Mean-SVG/TimeProfiles/Aciclovir-3_timeProfile_1_total.svg' was successfully saved.
09/10/2024 - 11:39:29
09/10/2024 - 13:38:59
Figure 'tests/Reports/Aciclovir-Mean-SVG/TimeProfiles/Aciclovir-4_timeProfileLog_2_total.svg' was successfully saved.
09/10/2024 - 11:39:29
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Reports 'tests/Reports/Aciclovir-Mean-SVG/appendix-sensitivity-analysis.md', 'tests/Reports/Aciclovir-Mean-SVG/appendix-pk-parameters.md', 'tests/Reports/Aciclovir-Mean-SVG/appendix-time-profile.md' were successfully merged into 'tests/Reports/Aciclovir-Mean-SVG/Report.md'
09/10/2024 - 11:39:29
09/10/2024 - 13:38:59
In 'tests/Reports/Aciclovir-Mean-SVG/Report.md', 0.666666666666667 tables and 6 figures were referenced.
09/10/2024 - 11:39:29
09/10/2024 - 13:38:59
In 'tests/Reports/Aciclovir-Mean-SVG/Report.md', 5 sections were numbered
09/10/2024 - 11:39:29
09/10/2024 - 13:38:59
In 'tests/Reports/Aciclovir-Mean-SVG/Report.md', table of content of 6 lines was included.
09/10/2024 - 11:39:29
09/10/2024 - 13:38:59
'tests/Reports/Aciclovir-Mean-SVG/Report.md' already exists. Overwriting 'tests/Reports/Aciclovir-Mean-SVG/Report.md'.
09/10/2024 - 11:39:29
09/10/2024 - 13:38:59
Reports 'temp-report-title.md', 'tests/Reports/Aciclovir-Mean-SVG/Report.md' were successfully merged into 'tests/Reports/Aciclovir-Mean-SVG/Report.md'
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