Update Reference Reports #15

	name: Update Reference Reports

	on:
	workflow_dispatch:
	inputs:
	report:
	description: 'Report to update'
	required: true
	type: choice
	# TODO options to be called from a script or code
	options:
	- Aciclovir-Mean
	- Aciclovir-Mean-SVG
	- Aciclovir-Population
	- Raltegravir-Absorption
	- Raltegravir-Mass-Balance
	- Test-NO7
	- Test-NO8
	- Test-NO9
	- Test-NO10
	- Test-NO11
	- Test-NO12

	jobs:
	update-reference-reports:
	runs-on: ubuntu-latest
	# Allow only authorized collaborators to trigger GA:
	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
	# All steps in workflow:
	steps:
	- name: Checkout
	uses: actions/checkout@v4
	- name: Update reference report with test report
	run: \|
	rm -r Reports/${{ inputs.report }}
	cp -R tests/Reports/${{ inputs.report }} Reports/${{ inputs.report }}
	- name: Commit updates
	run: \|
	git config --local user.email "[email protected]"
	git config --local user.name "GitHub Actions"
	git add ./Reports/${{ inputs.report }} \|\| echo "No changes in Reference Report ${{ inputs.report }}"
	git commit -m "Update ${{ inputs.report }}" \|\| echo "No changes to commit"
	- name: Create Pull Request
	uses: peter-evans/create-pull-request@v6
	with:
	branch: 30_update_${{ inputs.report }}
	title: 'Update ${{ inputs.report }}'
	body: \|
	Update Reference Report ${{ inputs.report }} #30
	labels: \|
	update

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