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R folder contents for GSA package (#5)
* Update DESCRIPTION * Create NAMESPACE * ud * ud install dependencies and lint * Update install_dependencies.R * Update install_dependencies.R * Update install_dependencies.R * Update install_dependencies.R
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install.packages(c('testthat','rmarkdown','spelling'), repos = 'http://cran.us.r-project.org', type='win.binary') | ||
install.packages(c('dplyr','purrr','covr','readr','tidyr','webshot','spelling','readxl','data.table','gridtext','ggtext','tidyselect','testthat','rmarkdown','pkgdown','ggplot2','shiny','shinyTree','shinyjs','SobolSequence','writexl','tictoc','pkgload'), repos = 'http://cran.us.r-project.org', type='win.binary') | ||
install.packages('https://github.com/Open-Systems-Pharmacology/rClr/releases/download/v0.9.1/rClr_0.9.1.zip', repos = NULL, type = 'binary') | ||
install.packages('https://github.com/Open-Systems-Pharmacology/OSPSuite.RUtils/releases/download/v1.4.23/ospsuite.utils_1.4.23.zip', repos = NULL, type = 'binary') | ||
install.packages('https://github.com/Open-Systems-Pharmacology/TLF-Library/releases/download/v1.5.125/tlf_1.5.125.zip', repos = NULL, type = 'binary') | ||
install.packages('https://github.com/Open-Systems-Pharmacology/OSPSuite-R/releases/download/v11.3.520/ospsuite_11.3.520.zip', repos = NULL, type = 'binary') |
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Type: Package | ||
Package: ospsuite.globalsensitivity | ||
Title: TODO | ||
Version: 1.0.0 | ||
Authors@R: c( | ||
person("Open-Systems-Pharmacology Community", role = c("cph", "fnd")), | ||
person("XXXXXXXXXXX", "XXXXXXXXXXXX", , "[email protected]", role = c("aut", "cre")) | ||
) | ||
Maintainer: XXXXXXXXXXX XXXXXXXXXXX <[email protected]> | ||
Description: TODO | ||
Title: Open Systems Pharmacology Global Sensitivity Package | ||
Version: 0.1.0 | ||
Author: Abdullah Hamadeh (Systems In Silico Ltd.) | ||
Maintainer: Abdullah Hamadeh <[email protected]> | ||
Description: A global sensitivity analysis for Open Systems Pharmacology models. | ||
License: GPL-2 | ||
URL: https://github.com/Open-Systems-Pharmacology/OSPSuite.GlobalSensitivitys, | ||
URL: https://github.com/Open-Systems-Pharmacology/OSPSuite.GlobalSensitivity, | ||
https://www.open-systems-pharmacology.org/OSPSuite.GlobalSensitivity/ | ||
BugReports: | ||
https://github.com/Open-Systems-Pharmacology/OSPSuite.GlobalSensitivity/issues | ||
Depends: | ||
R (>= 4.1) | ||
Depends: | ||
ospsuite, | ||
ggplot2, | ||
shiny, | ||
shinyTree, | ||
shinyjs, | ||
dplyr, | ||
parallel, | ||
SobolSequence, | ||
writexl, | ||
stats, | ||
tictoc | ||
Suggests: | ||
knitr, | ||
rmarkdown, | ||
|
@@ -23,6 +30,4 @@ Config/testthat/edition: 3 | |
Encoding: UTF-8 | ||
Language: en-US | ||
Roxygen: list(markdown = TRUE) | ||
RoxygenNote: 7.2.3 | ||
Collate: | ||
'dummy.R' | ||
RoxygenNote: 7.3.1 |
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# Generated by roxygen2: do not edit by hand | ||
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export(LogNormalDistribution) | ||
export(LogUniformDistribution) | ||
export(NormalDistribution) | ||
export(SADistribution) | ||
export(SAOutput) | ||
export(SAParameter) | ||
export(UniformDistribution) | ||
export(distribution) | ||
export(generateLowryPlot) | ||
export(generateMorrisPlot) | ||
export(generateTornadoPlot) | ||
export(getParameterListForUncertaintyAnalysis) | ||
export(pltGSABarGraph) | ||
export(runEFAST) | ||
export(runGUI) | ||
export(runMorris) | ||
export(runSU) | ||
export(runSobol) |
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Version: 1.0 | ||
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RestoreWorkspace: Default | ||
SaveWorkspace: Default | ||
AlwaysSaveHistory: Default | ||
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EnableCodeIndexing: Yes | ||
UseSpacesForTab: Yes | ||
NumSpacesForTab: 2 | ||
Encoding: UTF-8 | ||
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RnwWeave: Sweave | ||
LaTeX: pdfLaTeX | ||
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AutoAppendNewline: Yes | ||
StripTrailingWhitespace: Yes | ||
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BuildType: Package | ||
PackageUseDevtools: Yes | ||
PackageInstallArgs: --no-multiarch --with-keep.source |
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