Version 1.3 (for PBPK Model Library Release 11.3.1)

.github/scripts/check_urls.py

@@ -0,0 +1,43 @@
+import json
+import requests
+
+def check_url(url):
+    try:
+        response = requests.head(url, allow_redirects=True, timeout=10)
+        # Consider checking for other successful status codes if relevant
+        return response.status_code == 200
+    except requests.RequestException:
+        return False
+
+def main():
+    with open('./templates.json', 'r') as file:
+        try:
+            data = json.load(file)
+        except json.JSONDecodeError as e:
+            print(f"Error decoding JSON: {e}")
+            exit(1)
+
+    # Access the 'Templates' key in the root object
+    if 'Templates' in data:
+        templates = data['Templates']
+    else:
+        print("JSON does not contain 'Templates'")
+        exit(1)
+
+    if not isinstance(templates, list):
+        print("'Templates' is not a list")
+        exit(1)
+
+    for item in templates:
+        # Ensure each item is a dictionary and has a 'Url' key
+        if isinstance(item, dict) and 'Url' in item:
+            url = item['Url']
+            if not check_url(url):
+                print(f'URL check failed for {url}')
+                exit(1) # Exit with error if any URL check fails
+        else:
+            print(f"Item is not a dictionary or missing 'Url' key: {item}")
+            exit(1)
+
+if __name__ == "__main__":
+    main()

.github/workflows/check-urls.yml

@@ -0,0 +1,28 @@
+name: Check URLs in JSON
+
+on:
+  [push, pull_request]
+
+permissions:
+  contents: read
+
+jobs:
+  check-urls:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: '3.x'
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install requests
+
+      - name: Check URLs
+        run: python .github/scripts/check_urls.py

templates.json

@@ -1,6 +1,12 @@
 {
-  "Version": "1.2",
+  "Version": "1.3",
   "Templates": [
+    {
+      "Type": "Compound",
+      "Name": "7E3",
+      "Url": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/7E3-Model/refs/tags/v1.0/7E3.json",
+      "Qualified": true
+    },
     {
       "Type": "Compound",
       "Name": "Alfentanil",
@@ -25,6 +31,18 @@
       "Url": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Atazanavir-Model/v1.2/Atazanavir-Model.json",
       "Qualified": true
     },
+    {
+      "Type": "Compound",
+      "Name": "BAY794620",
+      "Url": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/BAY794620-Model/v1.0/BAY794620.json",
+      "Qualified": true
+    },
+    {
+      "Type": "Compound",
+      "Name": "CDA1",
+      "Url": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/CDA1-Model/v1.0/CDA1.json",
+      "Qualified": true
+    },
     {
       "Type": "Compound",
       "Name": "Carbamazepine",
@@ -49,6 +67,12 @@
       "Url": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Dapagliflozin-Model/v1.3/Dapagliflozin-Model.json",
       "Qualified": true
     },
+    {
+      "Type": "Compound",
+      "Name": "Digoxin",
+      "Url": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Digoxin-Model/v2.0/Digoxin-Model.json",
+      "Qualified": true
+    },
     {
       "Type": "Compound",
       "Name": "Efavirenz",
@@ -85,12 +109,30 @@
       "Url": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Fluvoxamine-Model/v1.2/Fluvoxamine-Model.json",
       "Qualified": true
     },
+    {
+      "Type": "Compound",
+      "Name": "Inulin",
+      "Url": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Inulin-Model/v1.0/Inulin.json",
+      "Qualified": true
+    },
     {
       "Type": "Compound",
       "Name": "Itraconazole",
       "Url": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Itraconazole-Model/v1.3/Itraconazole-Model.json",
       "Qualified": true
     },
+    {
+      "Type": "Compound",
+      "Name": "MEDI524",
+      "Url": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/MEDI524-Model/v1.0/MEDI524.json",
+      "Qualified": true
+    },
+    {
+      "Type": "Compound",
+      "Name": "MEDI524YTE",
+      "Url": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/MEDI524YTE-Model/v1.0/MEDI524YTE.json",
+      "Qualified": true
+    },
     {
       "Type": "Compound",
       "Name": "Hydroxy-Itraconazole",
@@ -166,7 +208,7 @@
     {
       "Type": "Compound",
       "Name": "Rifampicin",
-      "Url": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Rifampicin-Model/v1.2/Rifampicin-Model.json",
+      "Url": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Rifampicin-Model/v1.3/Rifampicin-Model.json",
       "Qualified": true
     },
     {
@@ -187,6 +229,12 @@
       "Url": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Sufentanil-Model/v1.2/Sufentanil.json",
       "Qualified": true
     },
+    {
+      "Type": "Compound",
+      "Name": "Tefibazumab",
+      "Url": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Tefibazumab-Model/v1.0/Tefibazumab.json",
+      "Qualified": true
+    },
     {
       "Type": "Compound",
       "Name": "Tizanidine",
@@ -208,7 +256,13 @@
     {
       "Type": "Compound",
       "Name": "Verapamil",
-      "Url": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Verapamil-Model/v1.2/Verapamil-Model.json",
+      "Url": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Verapamil-Model/v2.0/Verapamil-Model.json",
+      "Qualified": true
+    },
+    {
+      "Type": "Compound",
+      "Name": "dAb2",
+      "Url": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/dAb2-Model/v1.0/dAb2.json",
       "Qualified": true
     }
   ]