MANTIS v1.0.5

MANTIS

MANTIS (Microsatellite Analysis for Normal-Tumor InStability) is a
program developed for detecting microsatellite instability from
paired-end BAM files. To perform analysis, the program needs a tumor BAM
and a matched normal BAM file (produced using the same pipeline) to
determine the instability score between the two samples within the pair.
MANTIS is written in Python. Later versions of Python 2 (e.g. 2.7.1,
2.7.8) are compatible, but use of Python 3 is encouraged.

Full documentation is available at MANTIS/README.md

Changes:

• Per-locus instability scores sorted by genomic position (#32)
• BAM indices ending with .bai accepted along with .bam.bai (#33)
• Documentation improvements
• Bugfixes:
  • Proper handling of directories containing a dot (#39)
  • Whitespace and indentation fixes
  • Ensure same python interpreter is used on systems with multiple Python versions (#52)

MANTIS v1.0.4

MANTIS

MANTIS (Microsatellite Analysis for Normal-Tumor InStability) is a
program developed for detecting microsatellite instability from
paired-end BAM files. To perform analysis, the program needs a tumor BAM
and a matched normal BAM file (produced using the same pipeline) to
determine the instability score between the two samples within the pair.
MANTIS is written in Python. Later versions of Python 2 (e.g. 2.7.1,
2.7.8) are compatible, but use of Python 3 is encouraged.

Full documentation is available at MANTIS/README.md

Changes:

• Support for newer versions of PySam
• Fixed bug in reporting of cosine dissimilarity score (still not recommended in favor of step-wise difference)

MANTIS v1.0.3

MANTIS

MANTIS (Microsatellite Analysis for Normal-Tumor InStability) is a
program developed for detecting microsatellite instability from
paired-end BAM files. To perform analysis, the program needs a tumor BAM
and a matched normal BAM file (produced using the same pipeline) to
determine the instability score between the two samples within the pair.
MANTIS is written in Python. Later versions of Python 2 (e.g. 2.7.1,
2.7.8) are compatible, but use of Python 3 is encouraged.

Full documentation is available at MANTIS/README.md