Develop (#219)

OHDSI · Sep 8, 2020 · 2217286 · 2217286
1 parent d1e3099
commit 2217286
Show file tree

Hide file tree

Showing 42 changed files with 77 additions and 41 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: CohortDiagnostics
 Type: Package
 Title: Diagnostics for OHDSI Studies
-Version: 1.2.6
-Date: 2020-09-03
+Version: 1.2.7
+Date: 2020-09-08
 Authors@R: c(
     person("Gowtham", "Rao", email = "[email protected]", role = c("aut", "cre")),
     person("Martijn", "Schuemie", email = "[email protected]", role = c("aut")),

diff --git a/NEWS.md b/NEWS.md
@@ -1,11 +1,28 @@
-CohortDiagnostics 1.2.6
+CohortDiagnostics 1.2.7
 =======================
 Note: 
 
 1.2.x is last release of v 1.x.x series. Future releases with new functionality are expected to have breaking changes with no backward compatability and will be 2.x.x series.
 
 Bug fixes:
 
+1. Temporal choice error message during mismatch with temporal characterization output not having timeId
+
+
+CohortDiagnostics 1.2.6
+=======================
+
+
+Bug fixes:
+
+1. Additional bug fixes for characterization/temporal characterization.
+
+
+CohortDiagnostics 1.2.5
+=======================
+
+Bug fixes:
+
 1. Additional bug fixes for characterization/temporal characterization.
 
 

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/articles/CohortDiagnosticsUsingWebApi.html b/docs/articles/CohortDiagnosticsUsingWebApi.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -3,5 +3,5 @@ pkgdown: 1.5.1
 pkgdown_sha: ~
 articles:
   CohortDiagnosticsUsingWebApi: CohortDiagnosticsUsingWebApi.html
-last_built: 2020-09-03T21:56Z
+last_built: 2020-09-08T13:23Z
 
diff --git a/docs/reference/CohortDiagnostics-package.html b/docs/reference/CohortDiagnostics-package.html
diff --git a/docs/reference/breakDownIndexEvents.html b/docs/reference/breakDownIndexEvents.html
diff --git a/docs/reference/compareCohortCharacteristics.html b/docs/reference/compareCohortCharacteristics.html
diff --git a/docs/reference/computeCohortOverlap.html b/docs/reference/computeCohortOverlap.html
diff --git a/docs/reference/createCohortTable.html b/docs/reference/createCohortTable.html
diff --git a/docs/reference/createConceptCountsTable.html b/docs/reference/createConceptCountsTable.html
diff --git a/docs/reference/extractConceptSetsJsonFromCohortJson.html b/docs/reference/extractConceptSetsJsonFromCohortJson.html
diff --git a/docs/reference/extractConceptSetsSqlFromCohortSql.html b/docs/reference/extractConceptSetsSqlFromCohortSql.html
diff --git a/docs/reference/findCohortIncludedSourceConcepts.html b/docs/reference/findCohortIncludedSourceConcepts.html
diff --git a/docs/reference/findCohortOrphanConcepts.html b/docs/reference/findCohortOrphanConcepts.html
diff --git a/docs/reference/findOrphanConcepts.html b/docs/reference/findOrphanConcepts.html
diff --git a/docs/reference/getCohortCharacteristics.html b/docs/reference/getCohortCharacteristics.html
diff --git a/docs/reference/getCohortCounts.html b/docs/reference/getCohortCounts.html
diff --git a/docs/reference/getCohortsJsonAndSql.html b/docs/reference/getCohortsJsonAndSql.html
diff --git a/docs/reference/getIncidenceRate.html b/docs/reference/getIncidenceRate.html
diff --git a/docs/reference/getInclusionStatistics.html b/docs/reference/getInclusionStatistics.html
diff --git a/docs/reference/getInclusionStatisticsFromFiles.html b/docs/reference/getInclusionStatisticsFromFiles.html
diff --git a/docs/reference/getTimeDistributions.html b/docs/reference/getTimeDistributions.html
diff --git a/docs/reference/getUniqueConceptIds.html b/docs/reference/getUniqueConceptIds.html
diff --git a/docs/reference/index.html b/docs/reference/index.html
diff --git a/docs/reference/instantiateCohort.html b/docs/reference/instantiateCohort.html
diff --git a/docs/reference/instantiateCohortSet.html b/docs/reference/instantiateCohortSet.html
diff --git a/docs/reference/launchCohortExplorer.html b/docs/reference/launchCohortExplorer.html
diff --git a/docs/reference/launchDiagnosticsExplorer.html b/docs/reference/launchDiagnosticsExplorer.html
diff --git a/docs/reference/plotincidenceRate.html b/docs/reference/plotincidenceRate.html
diff --git a/docs/reference/preMergeDiagnosticsFiles.html b/docs/reference/preMergeDiagnosticsFiles.html
diff --git a/docs/reference/runCohortDiagnostics.html b/docs/reference/runCohortDiagnostics.html
diff --git a/docs/reference/runCohortDiagnosticsUsingExternalCounts.html b/docs/reference/runCohortDiagnosticsUsingExternalCounts.html
diff --git a/docs/reference/writeOmopvocabularyTables.html b/docs/reference/writeOmopvocabularyTables.html
diff --git a/extras/CohortDiagnostics.pdf b/extras/CohortDiagnostics.pdf
diff --git a/inst/doc/CohortDiagnosticsUsingWebApi.pdf b/inst/doc/CohortDiagnosticsUsingWebApi.pdf