Merge pull request #7 from Nuwa-genomics/development

use python v3
Nuwa-genomics · Mar 15, 2024 · 9e97732 · 9e97732
2 parents 9f323b4 + 971fa30
commit 9e97732
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diff --git a/.github/workflows/run_tests.yml b/.github/workflows/run_tests.yml
@@ -13,9 +13,9 @@ jobs:
     - uses: actions/checkout@v2
     - name: Update docs
       run: |
-        pip install docstring-parser==0.15
-        python docs/generate_docs.py
+        pip3 install docstring-parser==0.15
+        python3 docs/generate_docs.py
     - name: Run tests
       run: |
         docker system prune --force
-        docker-compose -f tests.docker-compose.yml up --build --abort-on-container-exit
+        docker compose -f tests.docker-compose.yml up --build --abort-on-container-exit
diff --git a/app/ml/solo_scvi/utils.py b/app/ml/solo_scvi/utils.py
@@ -12,7 +12,6 @@ def get_solo_model_history(solo, vae):
         if i == "train_loss_epoch":
             solo_train_loss_df = solo.history[i]
 
-
     solo_df = solo_valid_loss_df.join(solo_train_loss_df, on='epoch')
 
     # vae
-Original file line number
+Diff line change
@@ Expand Up / @@ -12,7 +12,6 @@ def get_solo_model_history(solo, vae): @@
             if i == "train_loss_epoch":
                 solo_train_loss_df = solo.history[i]
         solo_df = solo_valid_loss_df.join(solo_train_loss_df, on='epoch')
         # vae
@@ Expand Down @@