Code

ci: version bump to 0.7.0#92

Code

Closed

CaibinSh wants to merge 61 commits intomainNovartis/scar:mainfrom developNovartis/scar:developCopy head branch name to clipboard

+1,461-802

Commits

Commits on May 26, 2024

• fix: optomize dataloading for ambient profile

  CaibinSh

  committed
  8b77310

  Copy full SHA for 8b77310

• fix: optomize dataloading for ambient profile

  CaibinSh

  committed
  3896417

  Copy full SHA for 3896417

• docs: update installation

  CaibinSh

  committed
  3a0058d

  Copy full SHA for 3a0058d

• feat: add functionality for batch ambient removal

  CaibinSh

  committed
  5bc0d84

  Copy full SHA for 5bc0d84

• feat: add functionality for batch ambient removal

  CaibinSh

  committed
  353059f

  Copy full SHA for 353059f

• fix: fix a bug and refactor dataloading

  CaibinSh

  committed
  5066899

  Copy full SHA for 5066899

• fix: fix a bug

  CaibinSh

  committed
  e5ebaf8

  Copy full SHA for e5ebaf8

• fix: fix a bug

  CaibinSh

  committed
  d6c1663

  Copy full SHA for d6c1663

• fix: fix a bug

  CaibinSh

  committed
  24e1f95

  Copy full SHA for 24e1f95

• fix: fix a bug

  CaibinSh

  committed
  db17c87

  Copy full SHA for db17c87

Commits on May 28, 2024

• refactor: refactor scar dataloader

  CaibinSh

  committed
  7bb5d9a

  Copy full SHA for 7bb5d9a

• refactor: refactor codes for better GPU usage

  CaibinSh

  committed
  535326f

  Copy full SHA for 535326f

• refactor: refactor codes for better GPU usage

  CaibinSh

  committed
  73f737c

  Copy full SHA for 73f737c

Commits on Jul 24, 2024

• refactor: Refactor functions for compatibility with scipy 1.14

  CaibinSh

  committed
  7ada773

  Copy full SHA for 7ada773

Commits on Jul 25, 2024

• refactor: load entire data to GPU

  CaibinSh

  committed
  cab3872

  Copy full SHA for cab3872

Commits on Jul 27, 2024

• refactor(scar): refactor dataloading to improve efficiency

  CaibinSh

  committed
  c4901cd

  Copy full SHA for c4901cd

• refactor(scar): refactor dataloading to improve efficiency

  CaibinSh

  committed
  cbf222b

  Copy full SHA for cbf222b

• refactor(scar): refactor dataloading to improve efficiency

  CaibinSh

  committed
  99665da

  Copy full SHA for 99665da

• refactor(scar): refactor dataloading to improve efficiency

  CaibinSh

  committed
  707a0e0

  Copy full SHA for 707a0e0

• feature(scar): introduce caching functionality

  CaibinSh

  committed
  3f07c35

  Copy full SHA for 3f07c35

Commits on Jul 28, 2024

• doc(docs): update python version for readthedocs

  CaibinSh

  committed
  7d85da3

  Copy full SHA for 7d85da3

• doc(docs): update sphinx-gallery version for readthedocs

  CaibinSh

  committed
  7d436e4

  Copy full SHA for 7d436e4

• refactor(scar): delete unneccessary codes

  CaibinSh

  committed
  6b101f1

  Copy full SHA for 6b101f1

Commits on Jul 29, 2024

• refactor(scar): refactor scar to allow efficient usage of GPU

  CaibinSh

  committed
  c846d9b

  Copy full SHA for c846d9b

• refactor(scar): refactor scar to allow efficient usage of GPU

  CaibinSh

  committed
  4c808ab

  Copy full SHA for 4c808ab

• refactor(scar): refactor scar to allow efficient usage of GPU

  CaibinSh

  committed
  5eb2ebb

  Copy full SHA for 5eb2ebb

• refactor(scar): refactor scar to allow efficient usage of GPU

  CaibinSh

  committed
  6529b97

  Copy full SHA for 6529b97

Commits on Aug 7, 2024

• refactor(scar): not output native frequencies by default

  CaibinSh

  committed
  4ba263a

  Copy full SHA for 4ba263a

Commits on Aug 8, 2024

• refactor(scar): refactor dataloader

  CaibinSh

  committed
  4930798

  Copy full SHA for 4930798

• refactor(scar): remove redundant codes

  CaibinSh

  committed
  51a85e7

  Copy full SHA for 51a85e7

• refactor(scar): optimize dataloading

  CaibinSh

  committed
  41dd2a2

  Copy full SHA for 41dd2a2

• refactor(vae): refactor stochastic rounding for performance

  CaibinSh

  committed
  0af1c99

  Copy full SHA for 0af1c99

Commits on Aug 9, 2024

• chore: rewrite device log information

  CaibinSh

  committed
  08f9e22

  Copy full SHA for 08f9e22

Commits on Aug 10, 2024

• docs(scar): correct docs for scar

  CaibinSh

  committed
  d44f3a3

  Copy full SHA for d44f3a3

• docs(tutorials): update tutorial notebooks

  

  EC2 Default User

  committed
  06f3d7e

  Copy full SHA for 06f3d7e

• docs(scar): refactor docs

  CaibinSh

  committed
  78f8f76

  Copy full SHA for 78f8f76

• Merge branch 'develop' of https://github.com/Novartis/scar into develop

  CaibinSh

  committed
  43038ca

  Copy full SHA for 43038ca

Commits on Aug 11, 2024

• docs(scar): add docs for cache_capacity parameter

  CaibinSh

  committed
  2262e34

  Copy full SHA for 2262e34

• refactor(main): refactor command line tool

  CaibinSh

  committed
  d3d4d1b

  Copy full SHA for d3d4d1b

• refator(scar): refactor scar to automate calculation of ambient profile in the case of no ambient profile provided

  CaibinSh

  committed
  9ef0272

  Copy full SHA for 9ef0272

• fix(main): fix a bug

  CaibinSh

  committed
  bedfa6e

  Copy full SHA for bedfa6e

• fix(main): fix a bug

  CaibinSh

  committed
  1615684

  Copy full SHA for 1615684

Commits on Aug 12, 2024

• Merge branch 'main' into develop

  CaibinSh

  committed
  7363753

  Copy full SHA for 7363753

• fix(test): lower down sample size for test

  CaibinSh

  committed
  4c86c1b

  Copy full SHA for 4c86c1b

• docs(scar): update version in doc

  CaibinSh

  committed
  6b00c74

  Copy full SHA for 6b00c74

Commits on Aug 14, 2024

• docs(tutorial): update notebooks

  CaibinSh

  committed
  d581d7c

  Copy full SHA for d581d7c

• docs(tutorial): add a tutorial for batch denoising

  CaibinSh

  committed
  631e4bb

  Copy full SHA for 631e4bb

• refactor(docs): reset semantic_release to main branch

  CaibinSh

  committed
  53b839b

  Copy full SHA for 53b839b

• docs(tutorial): update hyperlink

  CaibinSh

  committed
  8a7b448

  Copy full SHA for 8a7b448

• Develop (#82)

  Show description for b0d3e2f
  

  CaibinSh

  and

  EC2 Default User

  authored
  b0d3e2f

  Copy full SHA for b0d3e2f

• fix(workflow): update semantic release

  CaibinSh

  committed
  bd64320

  Copy full SHA for bd64320

• fix(workflow): update semantic release

  CaibinSh

  committed
  0dbc5d4

  Copy full SHA for 0dbc5d4

• fix(workflow): update semantic release

  CaibinSh

  committed
  0260953

  Copy full SHA for 0260953

• update semantic release (#84)

  Show description for 3d65da8
  

  CaibinSh

  and

  EC2 Default User

  authored
  3d65da8

  Copy full SHA for 3d65da8

• fix(workflow): update semantic release

  CaibinSh

  committed
  8adb533

  Copy full SHA for 8adb533

• Merge branch 'main' into develop

  CaibinSh

  authored
  9c6a9e2

  Copy full SHA for 9c6a9e2

• chore: change semantic release branch

  CaibinSh

  committed
  5d882b7

  Copy full SHA for 5d882b7

• Merge branch 'develop' of https://github.com/Novartis/scar into develop

  CaibinSh

  committed
  92e3a86

  Copy full SHA for 92e3a86

• chore: change semantic release branch

  CaibinSh

  committed
  9d950b1

  Copy full SHA for 9d950b1

• chore: change semantic release branch

  CaibinSh

  committed
  0b28e11

  Copy full SHA for 0b28e11

• chore: change semantic release branch

  CaibinSh

  committed
  c89123a

  Copy full SHA for c89123a