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CaibinSh merged 59 commits intomainNovartis/scar:mainfrom developNovartis/scar:developCopy head branch name to clipboardAug 14, 2024

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Commits

Commits on May 26, 2024

• fix: optomize dataloading for ambient profile

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• fix: optomize dataloading for ambient profile

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• docs: update installation

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• feat: add functionality for batch ambient removal

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• feat: add functionality for batch ambient removal

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• fix: fix a bug and refactor dataloading

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• fix: fix a bug

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• fix: fix a bug

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• fix: fix a bug

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• fix: fix a bug

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Commits on May 28, 2024

• refactor: refactor scar dataloader

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• refactor: refactor codes for better GPU usage

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• refactor: refactor codes for better GPU usage

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Commits on Jul 24, 2024

• refactor: Refactor functions for compatibility with scipy 1.14

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Commits on Jul 25, 2024

• refactor: load entire data to GPU

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Commits on Jul 27, 2024

• refactor(scar): refactor dataloading to improve efficiency

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• refactor(scar): refactor dataloading to improve efficiency

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• refactor(scar): refactor dataloading to improve efficiency

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• refactor(scar): refactor dataloading to improve efficiency

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• feature(scar): introduce caching functionality

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Commits on Jul 28, 2024

• doc(docs): update python version for readthedocs

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• doc(docs): update sphinx-gallery version for readthedocs

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• refactor(scar): delete unneccessary codes

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Commits on Jul 29, 2024

• refactor(scar): refactor scar to allow efficient usage of GPU

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• refactor(scar): refactor scar to allow efficient usage of GPU

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• refactor(scar): refactor scar to allow efficient usage of GPU

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• refactor(scar): refactor scar to allow efficient usage of GPU

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Commits on Aug 7, 2024

• refactor(scar): not output native frequencies by default

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Commits on Aug 8, 2024

• refactor(scar): refactor dataloader

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• refactor(scar): remove redundant codes

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• refactor(scar): optimize dataloading

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• refactor(vae): refactor stochastic rounding for performance

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Commits on Aug 9, 2024

• chore: rewrite device log information

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Commits on Aug 10, 2024

• docs(scar): correct docs for scar

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• docs(tutorials): update tutorial notebooks

  

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• docs(scar): refactor docs

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• Merge branch 'develop' of https://github.com/Novartis/scar into develop

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Commits on Aug 11, 2024

• docs(scar): add docs for cache_capacity parameter

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• refactor(main): refactor command line tool

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• refator(scar): refactor scar to automate calculation of ambient profile in the case of no ambient profile provided

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• fix(main): fix a bug

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• fix(main): fix a bug

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Commits on Aug 12, 2024

• Merge branch 'main' into develop

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• fix(test): lower down sample size for test

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• docs(scar): update version in doc

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Commits on Aug 14, 2024

• docs(tutorial): update notebooks

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• docs(tutorial): add a tutorial for batch denoising

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• refactor(docs): reset semantic_release to main branch

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• docs(tutorial): update hyperlink

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• fix(workflow): update semantic release

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• fix(workflow): update semantic release

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• fix(workflow): update semantic release

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• fix(workflow): update semantic release

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• Merge branch 'main' into develop

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• chore: change semantic release branch

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• Merge branch 'develop' of https://github.com/Novartis/scar into develop

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• chore: change semantic release branch

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• chore: change semantic release branch

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• chore: change semantic release branch

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