Prepare 0.4.0 release #181
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| # Tests that run on every PR | |
| name: Pull Request Checks | |
| on: [push, pull_request] | |
| jobs: | |
| black: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| name: Checkout repository | |
| - uses: actions/setup-python@v2 | |
| name: Setup Python | |
| with: | |
| python-version: 3.9 | |
| - name: Install black | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install black | |
| - name: Run black | |
| run: | | |
| black . --check | |
| # This job is copied over from `deploy.yaml` | |
| run-tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| # See: https://github.com/marketplace/actions/setup-conda | |
| - uses: s-weigand/setup-conda@v1 | |
| with: | |
| conda-channels: "conda-forge" | |
| - name: Build environment | |
| run: | | |
| conda env create -f environment.yml | |
| eval "$(conda shell.bash hook)" | |
| conda activate cellxgene-gateway | |
| python setup.py install | |
| - name: Run tests | |
| run: | | |
| eval "$(conda shell.bash hook)" | |
| conda activate cellxgene-gateway | |
| coverage run -m unittest discover tests | |
| - name: Check coverage | |
| run: | | |
| eval "$(conda shell.bash hook)" | |
| conda activate cellxgene-gateway | |
| coverage report --fail-under 41 | |
| coverage xml -i | |
| - name: "Upload coverage to Codecov" | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ./coverage.xml | |
| flags: unittests | |
| env_vars: OS,PYTHON | |
| name: codecov-umbrella | |
| fail_ci_if_error: true | |
| path_to_write_report: ./codecov_report.txt | |
| verbose: true |