cluster vs acsf comparison

Nishant-codex · Feb 25, 2025 · d98b5de · d98b5de
1 parent 51df704
commit d98b5de
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Showing 5 changed files with 3,724 additions and 1,686 deletions.
diff --git a/notebooks_acsf/SH_FN_comparison.ipynb b/notebooks_acsf/SH_FN_comparison.ipynb
@@ -4,7 +4,16 @@
    "cell_type": "code",
    "execution_count": 2,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "c:\\Users\\Nishant Joshi\\anaconda3\\envs\\brian2\\Lib\\site-packages\\pandas\\core\\arrays\\masked.py:60: UserWarning: Pandas requires version '1.3.6' or newer of 'bottleneck' (version '1.3.5' currently installed).\n",
+      "  from pandas.core import (\n"
+     ]
+    }
+   ],
    "source": [
     "import pandas as pd \n",
     "import matplotlib.pyplot as plt \n",
@@ -160,14 +169,14 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
+   "execution_count": 4,
    "metadata": {},
    "outputs": [],
    "source": [
-    "FN_combined = pd.read_pickle('D:/Data For Publication/combined_FN_acsf.pkl')\n",
-    "FN_combined = FN_combined[~FN_combined.exp_name.isin(prob_exps)]\n",
-    "SH_combined = pd.read_pickle('D:/Data For Publication/combined_CC_acsf.pkl')\n",
-    "SH_combined = SH_combined[~SH_combined.exp_name.isin(prob_exps)]"
+    "FN_combined = pd.read_pickle('D:/Data For Publication/paper1/combined_FN_acsf.pkl')\n",
+    "# FN_combined = FN_combined[~FN_combined.exp_name.isin(prob_exps)]\n",
+    "SH_combined = pd.read_pickle('D:/Data For Publication/paper1/combined_CC_acsf.pkl')\n",
+    "# SH_combined = SH_combined[~SH_combined.exp_name.isin(prob_exps)]"
    ]
   },
   {
@@ -178,7 +187,18 @@
     {
      "data": {
       "text/plain": [
-       "186"
+       "0      170615_NC_19\n",
+       "1      170616_NC_20\n",
+       "2      170620_NC_22\n",
+       "3      170626_NC_29\n",
+       "4      170627_NC_30\n",
+       "           ...     \n",
+       "185    xuan_9519_E3\n",
+       "186    xuan_9919_E1\n",
+       "187    xuan_9919_E2\n",
+       "188    xuan_9919_E3\n",
+       "189    xuan_9919_E4\n",
+       "Name: exp_name, Length: 190, dtype: object"
       ]
      },
      "execution_count": 8,
@@ -187,7 +207,7 @@
     }
    ],
    "source": [
-    "len(FN_combined)"
+    "FN_combined.exp_name"
    ]
   },
   {
@@ -4443,7 +4463,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "base",
+   "display_name": "brian2",
    "language": "python",
    "name": "python3"
   },
@@ -4457,7 +4477,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.8"
+   "version": "3.12.1"
   }
  },
  "nbformat": 4,

diff --git a/notebooks_drug/Clustering differences.ipynb b/notebooks_drug/Clustering differences.ipynb