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pre-commit is a useful tool to run some programs while making a commit. If anything goes wrong or if a file changes, the commit is aborted.
It is very nice to have a pre-commit hook for pydoc-markdown, as it can ensure one does not commit code changes without updating the documentation (in case the documentation is a versioned file too).
Of course if you don't need to update documentation in your repository when your code change, you simply don't use that pre-commit hook.