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Exploration of high-throughput data for heat tolerance selection in Capsicum annuum

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2centerClusterPhenotypeMeans.csv
2centerClusterPhenotypeMeans.csv
 
 
G2P_PepperData.Rmd
G2P_PepperData.Rmd
 
 
README.md
README.md
 
 
pepperGenotypeMeansWithCluster.csv
pepperGenotypeMeansWithCluster.csv
 
 
pepperGenotypeMeansWithClusterClassic.csv
pepperGenotypeMeansWithClusterClassic.csv
 
 
pepperGenotypeMeansWithClusterHyper.csv
pepperGenotypeMeansWithClusterHyper.csv
 
 
traitBLUPS.R
traitBLUPS.R
 
 
traitBLUPs_combined.csv
traitBLUPs_combined.csv
 
 
traitBLUPs_control.csv
traitBLUPs_control.csv
 
 
traitBLUPs_full.csv
traitBLUPs_full.csv
 
 
traitBLUPs_stress1.csv
traitBLUPs_stress1.csv
 
 
traitBLUPs_stress2.csv
traitBLUPs_stress2.csv
 
 
traitBayesBLUPS.R
traitBayesBLUPS.R
 
 
traitBayesCBLUPS_LOOCV_control.csv
traitBayesCBLUPS_LOOCV_control.csv
 
 
traitBayesCBLUPS_LOOCV_stress1.csv
traitBayesCBLUPS_LOOCV_stress1.csv
 
 
traitBayesCBLUPS_LOOCV_stress2.csv
traitBayesCBLUPS_LOOCV_stress2.csv
 
 
traitBayesCBLUPS_control.csv
traitBayesCBLUPS_control.csv
 
 
traitBayesCBLUPS_stress1.csv
traitBayesCBLUPS_stress1.csv
 
 
traitBayesCCorrelations_LOOCV_control.csv
traitBayesCCorrelations_LOOCV_control.csv
 
 
traitBayesCCorrelations_LOOCV_stress1.csv
traitBayesCCorrelations_LOOCV_stress1.csv
 
 
traitBayesCCorrelations_LOOCV_stress2.csv
traitBayesCCorrelations_LOOCV_stress2.csv
 
 
traitBayesCCorrelations_control.csv
traitBayesCCorrelations_control.csv
 
 
traitBayesCCorrelations_stress1.csv
traitBayesCCorrelations_stress1.csv
 
 
traitCVBLUPS.R
traitCVBLUPS.R
 
 
traitGBLUPS.R
traitGBLUPS.R
 
 
traitGBLUPS_KCV_CandPred.R
traitGBLUPS_KCV_CandPred.R
 
 
traitGBLUPS_KCV_CandPred_control.csv
traitGBLUPS_KCV_CandPred_control.csv
 
 
traitGBLUPS_KCV_CandPred_stress1.csv
traitGBLUPS_KCV_CandPred_stress1.csv
 
 
traitGBLUPS_KCV_CandPred_stress2.csv
traitGBLUPS_KCV_CandPred_stress2.csv
 
 
traitGBLUPS_KCV_control.csv
traitGBLUPS_KCV_control.csv
 
 
traitGBLUPS_KCV_stress1.csv
traitGBLUPS_KCV_stress1.csv
 
 
traitGBLUPS_KCV_stress2.csv
traitGBLUPS_KCV_stress2.csv
 
 
traitGBLUPS_LOOCV_control.csv
traitGBLUPS_LOOCV_control.csv
 
 
traitGBLUPS_LOOCV_stress1.csv
traitGBLUPS_LOOCV_stress1.csv
 
 
traitGBLUPS_LOOCV_stress2.csv
traitGBLUPS_LOOCV_stress2.csv
 
 
traitGBLUPS_control.csv
traitGBLUPS_control.csv
 
 
traitGBLUPS_stress1.csv
traitGBLUPS_stress1.csv
 
 
traitGBLUPS_stress2.csv
traitGBLUPS_stress2.csv
 
 
traitGCorrelations_KCV_CandPred_control.csv
traitGCorrelations_KCV_CandPred_control.csv
 
 
traitGCorrelations_KCV_CandPred_stress1.csv
traitGCorrelations_KCV_CandPred_stress1.csv
 
 
traitGCorrelations_KCV_CandPred_stress2.csv
traitGCorrelations_KCV_CandPred_stress2.csv
 
 
traitGCorrelations_KCV_control.csv
traitGCorrelations_KCV_control.csv
 
 
traitGCorrelations_KCV_stress1.csv
traitGCorrelations_KCV_stress1.csv
 
 
traitGCorrelations_KCV_stress2.csv
traitGCorrelations_KCV_stress2.csv
 
 
traitGCorrelations_LOOCV_control.csv
traitGCorrelations_LOOCV_control.csv
 
 
traitGCorrelations_LOOCV_stress1.csv
traitGCorrelations_LOOCV_stress1.csv
 
 
traitGCorrelations_LOOCV_stress2.csv
traitGCorrelations_LOOCV_stress2.csv
 
 
traitGCorrelations_control.csv
traitGCorrelations_control.csv
 
 
traitGCorrelations_stress1.csv
traitGCorrelations_stress1.csv
 
 
traitGCorrelations_stress2.csv
traitGCorrelations_stress2.csv
 
 
traitGEmodeling.R
traitGEmodeling.R
 
 
traitLassoBLUPS_control.csv
traitLassoBLUPS_control.csv
 
 
traitLassoBLUPS_stress1.csv
traitLassoBLUPS_stress1.csv
 
 
traitLassoBLUPS_stress2.csv
traitLassoBLUPS_stress2.csv
 
 
traitLassoCorrelations_control.csv
traitLassoCorrelations_control.csv
 
 
traitLassoCorrelations_stress1.csv
traitLassoCorrelations_stress1.csv
 
 
traitLassoCorrelations_stress2.csv
traitLassoCorrelations_stress2.csv
 
 
traitRRBLUPS.R
traitRRBLUPS.R
 
 
traitRRBLUPS_TrgtPred.R
traitRRBLUPS_TrgtPred.R
 
 
traitRRBLUPS_control.csv
traitRRBLUPS_control.csv
 
 
traitRRBLUPS_stress1.csv
traitRRBLUPS_stress1.csv
 
 
traitRRBLUPS_stress2.csv
traitRRBLUPS_stress2.csv
 
 
traitRRCorrelations_control.csv
traitRRCorrelations_control.csv
 
 
traitRRCorrelations_stress1.csv
traitRRCorrelations_stress1.csv
 
 
traitRRCorrelations_stress2.csv
traitRRCorrelations_stress2.csv
 
 
traitRR_TrgtPopPredPhen_control.csv
traitRR_TrgtPopPredPhen_control.csv
 
 
traitRR_TrgtPopPredPhen_stress1.csv
traitRR_TrgtPopPredPhen_stress1.csv
 
 
traitRR_TrgtPopPredPhen_stress2.csv
traitRR_TrgtPopPredPhen_stress2.csv
 
 
traitRR_TrnPhen&TrgtPredPhen_control.csv
traitRR_TrnPhen&TrgtPredPhen_control.csv
 
 
traitRR_TrnPhen&TrgtPredPhen_stress1.csv
traitRR_TrnPhen&TrgtPredPhen_stress1.csv
 
 
traitRR_TrnPhen&TrgtPredPhen_stress2.csv
traitRR_TrnPhen&TrgtPredPhen_stress2.csv
 
 
traitRR_TrnPopPredAcc_control.csv
traitRR_TrnPopPredAcc_control.csv
 
 
traitRR_TrnPopPredAcc_stress1.csv
traitRR_TrnPopPredAcc_stress1.csv
 
 
traitRR_TrnPopPredAcc_stress2.csv
traitRR_TrnPopPredAcc_stress2.csv
 
 
univariateBLUPsWeightedRankSum.R
univariateBLUPsWeightedRankSum.R
 
 
univariateBLUPsWeightedRankSumWithPredGen.R
univariateBLUPsWeightedRankSumWithPredGen.R
 
 

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Capsicum_selection

Exploration of high-throughput data for heat tolerance selection in Capsicum annuum

This repository contains all data and code used in the publication tentatively titled "Exploration of high-throughput data for heat tolerance selection in Capsicum annuum" in collaboration with the G2P-Sol project.

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Exploration of high-throughput data for heat tolerance selection in Capsicum annuum

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