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Aviti run manifest dev #359

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a8d93fc
remove unused code
kedhammar Sep 11, 2024
e80b6c7
remove unused code
kedhammar Sep 11, 2024
ee7aa17
differentiate phix sets
kedhammar Sep 11, 2024
6be8ca2
handle special idxs
kedhammar Sep 11, 2024
1f81f7a
fix syntax error
kedhammar Sep 11, 2024
b7d4504
try tackling mypy issues
kedhammar Sep 11, 2024
12c43db
improve readability for mypy
kedhammar Sep 11, 2024
1aba9b1
revcomp all i5 for dual idxs
kedhammar Sep 11, 2024
db5dac9
refactor and fix ss3
kedhammar Sep 11, 2024
f8de81c
add todods
kedhammar Sep 11, 2024
221803a
bugfix
kedhammar Sep 11, 2024
fc9f6d1
big wip
kedhammar Sep 12, 2024
dfabee5
starting to look good :)
kedhammar Sep 12, 2024
071936e
mypy fix
kedhammar Sep 12, 2024
8082fd0
bump vlog
kedhammar Sep 12, 2024
70938ee
Merge branch 'master' into aviti-manifest-fix
kedhammar Sep 12, 2024
e18ded7
remove todos
kedhammar Sep 12, 2024
ac5028e
Merge branch 'aviti-manifest-fix' of github.com:kedhammar/scilifelab_…
kedhammar Sep 12, 2024
44ed19b
group by lane
kedhammar Sep 12, 2024
4b8eeab
bugfix
kedhammar Sep 12, 2024
3e9467f
Merge branch 'master' into aviti-manifest-fix
kedhammar Sep 12, 2024
036d79d
typo
kedhammar Sep 12, 2024
6b6138f
Merge branch 'aviti-manifest-fix' of github.com:kedhammar/scilifelab_…
kedhammar Sep 12, 2024
d5f4eae
make untrimmed, trimmed and partitioned manifests
kedhammar Sep 13, 2024
ebc02b1
Merge branch 'master' into aviti-manifest-fix
kedhammar Sep 13, 2024
f8464ec
Update VERSIONLOG.md
kedhammar Sep 13, 2024
176d6ec
simplify code and fix mypy
kedhammar Sep 13, 2024
0f41c00
Merge branch 'aviti-manifest-fix' of github.com:kedhammar/scilifelab_…
kedhammar Sep 13, 2024
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4 changes: 4 additions & 0 deletions VERSIONLOG.md
Original file line number Diff line number Diff line change
@@ -1,5 +1,9 @@
# Scilifelab_epps Version Log

## 20240913.1

Generate composite run manifests for AVITI based on index lengths.

## 20240912.3

Fix bugs with EPP in the BCL conversion step
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