ONT update

[kedhammar]

Summary of changes:

• Introduce new module calc_from_args in which generalized calculations can be performed without hardcoding the names of the steps, fields and file slots that are used. This can instead be customized in the LIMS config as script arguments.
• Add ONT barcodes to data dir for cross-referencing LIMS reagent labels
• epp.py functions to traceback target artifact using API acrobatics
• Introduced function get_ont_library_contents for breaking down ONT sequencing libraries into their components and returning a master dataframe
• Derive Anglerfish and MinKNOW samplesheets from aforementioned dataframe
• Dump aforementioned dataframe in StatusDB nanopore_runs database

General improvements:

• Typing annotation
• Harmonize variable names
• Use 'fail-with-grace' wrapper for several scripts so you always get a log
• Renamed some functions

[alneberg]

👍

[kedhammar]

Is this referring to the comments showing the shrinking list of possibilities or something else?

[alneberg]

WOW!