Merge pull request #304 from kedhammar/broaden-anglerfish-run-search

Broaden anglerfish run search
NationalGenomicsInfrastructure · Jan 30, 2024 · 8c2657e · 8c2657e
2 parents 5fa16f6 + 625c57c
commit 8c2657e
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diff --git a/VERSIONLOG.md b/VERSIONLOG.md
@@ -1,5 +1,9 @@
 # Scilifelab_epps Version Log
 
+## 20240126.1
+
+Discover latest anglerfish run even if embedded in subdir of run dir
+
 ## 20240122.1
 
 Enable copy_field_art2samp to copy values from Aggregate QC steps

diff --git a/scripts/parse_anglerfish_results.py b/scripts/parse_anglerfish_results.py
@@ -35,7 +35,7 @@ def find_latest_flowcell_run(currentStep: Process) -> str:
 
 
 def find_latest_anglerfish_run(latest_flowcell_run_path: str) -> str:
-    anglerfish_query = f"{latest_flowcell_run_path}/*anglerfish_run*"
+    anglerfish_query = f"{latest_flowcell_run_path}/**/anglerfish_run*"
     anglerfish_glob = glob.glob(anglerfish_query)
 
     assert (