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ESM2 Finetuning refactor #574

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826 changes: 826 additions & 0 deletions docs/docs/user-guide/examples/bionemo-esm2/finetune.ipynb

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263 changes: 0 additions & 263 deletions docs/docs/user-guide/examples/bionemo-esm2/finetune.md

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2 changes: 1 addition & 1 deletion docs/docs/user-guide/getting-started/development.md
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Expand Up @@ -136,7 +136,7 @@ of the model. The fine-tuning steps will be application-specific, but a general
6. **Run inference**: Once the model is fine-tuned, use it to make predictions on new, unseen data.

For more information on fine-tuning a model, refer to the [ESM-2 Fine-tuning
Tutorial](../examples/bionemo-esm2/finetune.md).
Tutorial](../examples/bionemo-esm2/finetune.ipynb).

## Advanced Developer Documentation

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1 change: 1 addition & 0 deletions sub-packages/bionemo-esm2/pyproject.toml
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Expand Up @@ -22,6 +22,7 @@ bionemo-esm2-train= "bionemo.esm2.run.main:main"
bionemo-esm2-recipe= "bionemo.esm2.run.recipes:main"
infer_esm2 = "bionemo.esm2.scripts.infer_esm2:infer_esm2_entrypoint"
train_esm2 = "bionemo.esm2.scripts.train_esm2:train_esm2_entrypoint"
finetune_esm2 = "bionemo.esm2.scripts.finetune_esm2:finetune_esm2_entrypoint"

# Make sure that the tokenizer files are included along with the python files during installation.
[tool.setuptools.package-data]
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